Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2489 ATGGCGATCGCTACCCAGCTTCCCTGTGATGGTGACGGAGCCTGTATGGCCTGCAAGGCGAAGCCGGCGGAGGAAGAGAAGCTGAAGTGTAAATCCTGCGCCACCCTGTGGCATGTCGGTTGTCTCTCTTCCCCTCCAGCGACGATGGCGGAGACCCTTCAGTGGGAATGCCCCGATTGCTCCACCCTGCCCTCTGACCTTCCTCCGGTGGCAATCGGAAAGTCCTTGCTAGAGGGAGCCGGCGATGGGTCCGGTGATTTGATAGCTGCAATTCGAGCAATTGAGGCCGATTCTTCCCTAACGGAGAGGGAGAAAGCCAAGAAACGTCAACGACTCCATATCAAAAAGGCTGGGTTGGAAGAGGACGAGGACGAGGACGCGGAGGAAGAGAAGAGGAAGGGAGAAGGCGAAGGGAAGGATGTGTTGGATATTCTTAATGGGACTCTGAATTGCTGCTTTTGTCTACAGTTACTAGAGAGGCCTGTGACGACTCCATGTGGCCACAATTTCTGCCTAAAATGCTTTCAGAAATGGATTGGGCAAGGCAAATATACATGTGTAAAGTGTCGTCGTACTATCCCTCCCAAAATGGCAAGCCAGCCACGTATCAATTCTGCTCTTGTAATTGCCATTCGTATGGCAAAAGTATCCAAAAACAATGCTGCTGGTGAAACATCGAAAGTTTACCATTTTGTGCATAACCAAGATAGACCAGACAAGGCATACACTACGGAGCGGGCTCAAAGGAAAGGCAAGGCAAATGCAGCAAGCGGAAAGATTTTTGTGACTGTGCCTCAGGATCATTTTGGTCCAATCCCTCCTGAGAGTGATCCAATTCGGAATCAGGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGGCTAGAATGCCGGCAATGGGGTGCCCACTTCCCACATGTTAGTGGTATTGCCGGACAATCAAATTATGGTGCACAATCAGTAGTTCTCTCAGGTGGTTATGTTGATGATGAGGATCATGGAGAGTGGTTTCTTTACACTGGAAGTGGTGGTAGGGATCTAAGTGGGAACAGACGAACGAATAATACACAGTCTTTCGATCAGAAGTTTGAGAAGTCCAACTTGGCTCTCAAAGTAAGTTGTCTAAAGGGTTATCCTGTTCGTGTGGTGAGGTCTCATAAAGAGAAGCGTTCCTCATATGCCCCTGAGAAAGGATTACGTTATGACGGTGTTTATAGAATTGAGAAGTGTTGGCAGAAACAAGGATTGCAGGGTTTCAAGGTCTGCCGATATTTGTTTGTTAGATGTGACAATGAACCAGCCCCTTGGACGAGTGATGATCACGGTGATCGCCCTCGTCCATTACCAGCAGTCTCTGAGTTGAAAAAGGCTGTAGCTGTAACTGAAAGGAAAGAGAGTCCATCTTGGGATTTTGATGAGCAAGATTCTTGTTGGAAGTGGAAGAAACCACCGCCTCCAAGCCAAAGACATGTAAAAAATGTGGATCCCAAGGAGATTGAAAGGTCAAGAAAAGAAATAAGAAAATCCCAAAAGATGTCAATCAGGGAAAGATTGTTGAGAGGATTTAGTTGCCATATTTGCAGGCAGGTTATGGTTTCTCCTGTGACAACACCCTGTGCTCATAATTTTTGCAAGTCATGTTTGGAAGGTGCATTTGCGGGTCAAGCTTTCGTGAGAGACAGAAGCAGAGGTGGAAGATCGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTGCTTGTCCTGTTGACATCTCTGATTTTCTTCAGAACCTTCAGATCAATACAGAGTTGATGGGTGTGATTGAGTCACTGAAAGCCGAGGCTGAAGAAAATGGAGATTCAGTGGACTTAACTGAGGATGCATATGGAGCGAAGGTAGAGGGTGATGAAACTGGTGCAGGAAAAGATGAGGAAATTGATTCAGATGAATGCAGCCAGAATGAGCCTGAGCAAAAGAACGATGATTATAAGGAAAACTTGGGTGAGAAGCTTAATGGAGATGGTGAACTTCAGTCAAAAGAACTTGAAGTGCCCAATGAAGTGCCAGATCTTGTAGCGAAGTGCAATGCAAAAAGAAAGAGGGCTGATGTTAAAGAACTTCCGCCTAAAAGGGCGAAAGGCCGAAATGCTAGGGATGAAGCAGTGGACGAAGGAAATGATTCGCCAAGTTCTCTCCATTTGCCATCAAATCATTTTACTGAGTGA 2202 0.4659 MAIATQLPCDGDGACMACKAKPAEEEKLKCKSCATLWHVGCLSSPPATMAETLQWECPDCSTLPSDLPPVAIGKSLLEGAGDGSGDLIAAIRAIEADSSLTEREKAKKRQRLHIKKAGLEEDEDEDAEEEKRKGEGEGKDVLDILNGTLNCCFCLQLLERPVTTPCGHNFCLKCFQKWIGQGKYTCVKCRRTIPPKMASQPRINSALVIAIRMAKVSKNNAAGETSKVYHFVHNQDRPDKAYTTERAQRKGKANAASGKIFVTVPQDHFGPIPPESDPIRNQGVLVGECWEDRLECRQWGAHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNRRTNNTQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWQKQGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPAVSELKKAVAVTERKESPSWDFDEQDSCWKWKKPPPPSQRHVKNVDPKEIERSRKEIRKSQKMSIRERLLRGFSCHICRQVMVSPVTTPCAHNFCKSCLEGAFAGQAFVRDRSRGGRSLRSQKNVMKCPACPVDISDFLQNLQINTELMGVIESLKAEAEENGDSVDLTEDAYGAKVEGDETGAGKDEEIDSDECSQNEPEQKNDDYKENLGEKLNGDGELQSKELEVPNEVPDLVAKCNAKRKRADVKELPPKRAKGRNARDEAVDEGNDSPSSLHLPSNHFTE 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2489 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Dere05g2489 733 SMART PHD_3 14 61 IPR001965 -
Dere05g2489 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 621 IPR013083 -
Dere05g2489 733 MobiDBLite consensus disorder prediction 644 675 - -
Dere05g2489 733 SUPERFAMILY FYVE/PHD zinc finger 6 67 IPR011011 -
Dere05g2489 733 ProSiteProfiles YDG domain profile. 279 427 IPR003105 -
Dere05g2489 733 MobiDBLite consensus disorder prediction 685 718 - -
Dere05g2489 733 FunFam Predicted protein 103 216 - -
Dere05g2489 733 SUPERFAMILY RING/U-box 143 197 - -
Dere05g2489 733 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 250 445 - -
Dere05g2489 733 MobiDBLite consensus disorder prediction 607 733 - -
Dere05g2489 733 Gene3D - 250 446 IPR036987 -
Dere05g2489 733 Pfam SAD/SRA domain 282 430 IPR003105 -
Dere05g2489 733 SUPERFAMILY PUA domain-like 253 446 IPR015947 -
Dere05g2489 733 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Dere05g2489 733 SMART G9a_1 274 431 IPR003105 -
Dere05g2489 733 ProSitePatterns Zinc finger RING-type signature. 538 547 IPR017907 -
Dere05g2489 733 MobiDBLite consensus disorder prediction 111 136 - -
Dere05g2489 733 SMART ring_2 523 579 IPR001841 -
Dere05g2489 733 SMART ring_2 151 189 IPR001841 -
Dere05g2489 733 SMART ring_2 15 60 IPR001841 -
Dere05g2489 733 Pfam RING-type zinc-finger 523 577 IPR027370 -
Dere05g2489 733 Pfam Zinc finger, C3HC4 type (RING finger) 151 189 IPR018957 GO:0046872
Dere05g2489 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 217 IPR013083 -
Dere05g2489 733 ProSiteProfiles Zinc finger RING-type profile. 151 190 IPR001841 -
Dere05g2489 733 CDD RING-HC_ORTHRUS_rpt1 149 194 IPR047498 -
Dere05g2489 733 SUPERFAMILY RING/U-box 517 605 - -
Dere05g2489 733 ProSiteProfiles Zinc finger RING-type profile. 523 579 IPR001841 -
Dere05g2489 733 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 610 IPR045134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2489 Dere-ChrDere05 35385693 35390041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2489 1 614 C2H2 Transcription Factor Family AT5G39550 60.356 0.0 743