Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2487 ATGGTGAAGACAGAAGACAAGATCCAGACAGAGGCATCGAAGGGAATGCAATGTTCGTCAGATGGGAAGAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGGTCATGGGTATCGGAGATTAGGGCACCAAACCAGAAAGCACGAATATGGCTAGGCTCTTATTCAACCGCTGAGGCAGCAGCCAGAGCCTATGATGCTGCACTTCTGTGCCTTAAAGGCTCCTCTGCCAATCTCAATTTCCCTTCTGCTTCTTCTTCACACTCAAATATTCCTCAAGACACTCTCTTGTCCCCTAAATCAATCCAAAGAGTAGCTGCAGCAGCTGCTAATGCTAATAGTTTTGTTGAAAATGTCACCACCCCATCTTCTCCTCCTCCTGCTTCTACCCCTTCCTCATCAGTATCCTCCCCATCTATGGTCTCCTCTCCCTCTGATCAGATTGATGATGATGCTTCGCTAATCTCATCCTTCGAGGCCTTCTCTAGCTATGGTCACCCAAATGAACCAATGGCTATGCTGGAATCTTGGTACGGCTTTGATGGCCTTCAATCCCCTAAATATGTTGATCAAATGCTGAGTGGTGGTTTGTTCGACATTGATTCAAACCAGCTGCTCAGTGATTTCTACGAAGAAAGCGACATTCGTTTGTGGAGCTTCTGCTGA 672 0.4688 MVKTEDKIQTEASKGMQCSSDGKKKKKYKGVRMRSWGSWVSEIRAPNQKARIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSASSSHSNIPQDTLLSPKSIQRVAAAAANANSFVENVTTPSSPPPASTPSSSVSSPSMVSSPSDQIDDDASLISSFEAFSSYGHPNEPMAMLESWYGFDGLQSPKYVDQMLSGGLFDIDSNQLLSDFYEESDIRLWSFC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2487 223 MobiDBLite consensus disorder prediction 1 26 - -
Dere05g2487 223 CDD AP2 30 84 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Dere05g2487 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 153 - -
Dere05g2487 223 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 FunFam ethylene-responsive transcription factor ERF014-like 26 86 - -
Dere05g2487 223 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 MobiDBLite consensus disorder prediction 119 149 - -
Dere05g2487 223 MobiDBLite consensus disorder prediction 135 149 - -
Dere05g2487 223 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Dere05g2487 223 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2487 Dere-ChrDere05 35374249 35374920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2487 1 222 AP2-EREBP Transcription Factor Family AT1G21910 45.783 1.60e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g2487 AP2 5.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2487 05 35374249 35374920 Dere05g2487 05 35374249 35374920 ECH