Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2485 ATGTCTTTGAGCCCTCCTCGTGCAAGGACGAATGGCCCACCCAGAAGAACCTACCAGCTCTACTGGTGCTTCCGCTGTAATCGAATGGTCAGGCTCGCCCCCACACACCCCTCCGAGATTCTATGCCCTCGCTGTTTTGGACAGTTCCTTTGTGAAGTAAACATACCAAGACCAAGACTCCTCGTCGATTTCACCAATCCCGACCCTTCCCCGGAAGCGCGTTTGCTGGAAGCGCTTTCTCTCATGCTTGAACCACCAATCCGGCGATTCGACAACCGCTTCTCTGACCCAGAATCTGACCATACGGGCTTGCGGTGGACTCAGCGGCGACCTCACGAACGAGAAGGCCGACATCGCGAGAACCCAGATGCTGAAATTCCTGTTCGTCACATAAGACGTCCCCGACATCGTAGTTTTGATGCCAGAGCTGATGGTTTCGACCCAGAACCAGAAACCCATACTCGTCCTCGGACTTGGGTTATCGTTCGACCCGTGGATCGTTCCAACTCATTCGAACGGATCCCATGGCGACAAAATTCAATCCCACGACGGGTTGATCCGAGAGACTACTTTTTTGGGCCGGGTTTGGATGAACTGATTGAACAGCTGACGGAAAATGACCGGCAAGGTCCCCCGCCGGCGCCGAACAGAACTATCGATGCAATTCCGACCGTGAAAATATTAGAGACCCATTTGAAGGAGAGCTCTCGTTGCCCGGTTTGCCAGGAGGAGTTTGAAGTGGGTGGGCAAGCGAGGGAGTTACCCTGCAAGCATATATACCATTCTGATTGCATTGTGCCTTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGCCGGCACGAGGTGCCTGTGTGCTCTGGCTCTGCTGAATCCGGTGACGGGGACGGTGGCAATTTGCCGTGTTTGAGGTGGAGACAGTTGGCTTCTCTTTGGCCCTTCCATGGAAGGTATCGACGGGTTAATCCAGAACGGTAG 975 0.5385 MSLSPPRARTNGPPRRTYQLYWCFRCNRMVRLAPTHPSEILCPRCFGQFLCEVNIPRPRLLVDFTNPDPSPEARLLEALSLMLEPPIRRFDNRFSDPESDHTGLRWTQRRPHEREGRHRENPDAEIPVRHIRRPRHRSFDARADGFDPEPETHTRPRTWVIVRPVDRSNSFERIPWRQNSIPRRVDPRDYFFGPGLDELIEQLTENDRQGPPPAPNRTIDAIPTVKILETHLKESSRCPVCQEEFEVGGQARELPCKHIYHSDCIVPWLRLHNSCPVCRHEVPVCSGSAESGDGDGGNLPCLRWRQLASLWPFHGRYRRVNPER 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2485 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 285 IPR013083 -
Dere05g2485 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 283 - -
Dere05g2485 324 FunFam E3 ubiquitin-protein ligase RING1-like 202 285 - -
Dere05g2485 324 Pfam Ring finger domain 237 279 IPR001841 -
Dere05g2485 324 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Dere05g2485 324 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Dere05g2485 324 MobiDBLite consensus disorder prediction 92 123 - -
Dere05g2485 324 SMART ring_2 238 278 IPR001841 -
Dere05g2485 324 SUPERFAMILY RING/U-box 218 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2485 Dere-ChrDere05 35363013 35363987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2485 197 313 C3H Transcription Factor Family AT1G68180 43.089 6.67e-26 101