Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2484 ATGCCACGGAGGAGGAGTCGGCGATTGAGGAGATGGTTCGCGCGCATGTGTTTGGTGAACAATACTGTAGATAGTTCCGACTCTTCAGAATCCGAAACCCAGGCTTCTCGTCGGAGTTTTACATGGAACGATTACCTTCCTATGCCGCCGCCAGACGCCGTCACTGAAAACACTACACCTCATGCTGCCGGTTCAGTTACTGAAGTTGACTGGCGATTTCCGCCGCCGCCGCCGCCGCCATTCCCAAACGATGACTCAGTCCAACCAGGGATCAGTGAAAATGACATCAGAAGTTTCGTATTGGATTCTGAAAGCCCTAGCTACACCTACACGTATGAGCTGTATGACTATGAGAATGATACTCGTTGGGCGGTGATTGATGTCGTTAGACGTATGAGAATAACGGAGAAGTACGCAAGAGAGAAAATACTATGTCCCATATGCAAGGAGGAGTTCAGAGTGGGAGGAGAAGCAATGGAATTACCCTGCGACCATTCTTACTGCTGTGAATGTATTTGGAGTTGGCTCAACAATCACAGTACCTGCCCTGTTTGCCGCCGTCACTTTTCTTCTTGGGACTTCCAACCATCTCAAATCTTTTCTCCACTTCGAAACCCATCTCCATCTCCTCCTATAGCATGGCACAATCATCTCAATCTTACTCAAGAATCTGACTTGTCAAGTTCCCCTTCCCCGCCTGATAGTGAAGCTGGTTATGACACTGCACGTGAGGAGCTCGATGAATCTCAAGCCCATCCACAACAACTTCCTGCTTCCACAGCCAGCCCTACCTCTTCATTCATTACTTGA 810 0.4877 MPRRRSRRLRRWFARMCLVNNTVDSSDSSESETQASRRSFTWNDYLPMPPPDAVTENTTPHAAGSVTEVDWRFPPPPPPPFPNDDSVQPGISENDIRSFVLDSESPSYTYTYELYDYENDTRWAVIDVVRRMRITEKYAREKILCPICKEEFRVGGEAMELPCDHSYCCECIWSWLNNHSTCPVCRRHFSSWDFQPSQIFSPLRNPSPSPPIAWHNHLNLTQESDLSSSPSPPDSEAGYDTAREELDESQAHPQQLPASTASPTSSFIT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2484 269 MobiDBLite consensus disorder prediction 222 269 - -
Dere05g2484 269 SUPERFAMILY RING/U-box 127 192 - -
Dere05g2484 269 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Dere05g2484 269 PANTHER TARGET OF ERK KINASE MPK-1 24 189 - -
Dere05g2484 269 MobiDBLite consensus disorder prediction 23 59 - -
Dere05g2484 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 191 IPR013083 -
Dere05g2484 269 MobiDBLite consensus disorder prediction 23 41 - -
Dere05g2484 269 Pfam Ring finger domain 145 186 IPR001841 -
Dere05g2484 269 MobiDBLite consensus disorder prediction 252 269 - -
Dere05g2484 269 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Dere05g2484 269 SMART ring_2 145 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2484 Dere-ChrDere05 35360840 35361649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2484 124 186 C3H Transcription Factor Family AT1G68180 50.794 1.44e-14 69.7