Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2474 ATGGCTGAGGCTGAGGCTGAGGCTCACAGATCTACCGGCACTGTCAAGTGGTTCAATGCCTACAAGGGTTTCGGATTCATAGCCTCTGACGATGGTGGCGATGATCTCTTTGTGCATCACACTTCCATCCTATCCGATGGCTATCGCACCTTATCCGAGGGTCAGGCCGTGGAGTTCGTTGTGGATTACGGCGATGATGGACGAACGAAGGCTGTTGATGTCACTGCTCTGGTGAGATCTCGCCGTTTTGCTGTTGGTCGTGGTGGCAGTGGAAGAGGGTTTCCTGGTGGGAGAGGTAGAGGGGGTGGATATGGCGGGTACGGCGGACGCTATGGTGGCGGGGATGGTCGTGGTGATAATTACGGGTATGGTAGAGGTGGAGGGATATGGCGGAGGGGTAGAGGCTACGGTGGGGGAGGTGGCGGATACGGCGGAGGCCCTGAGTGTTATACTTGTGGCCGAGTGGGTCACTTGGCAAGAGACTGTTATCAGGGTGCTAGTGGTGGGACTCGGAGACGCGGTGGTGCTAGTGGCGGAGGTGGAGGAGTAGGAGGGTGTTTCAACTGCGGAGAGGAAGGGCATTTTGCGAGGGAATGTCCCATTATAGAGAAATGA 615 0.5642 MAEAEAEAHRSTGTVKWFNAYKGFGFIASDDGGDDLFVHHTSILSDGYRTLSEGQAVEFVVDYGDDGRTKAVDVTALVRSRRFAVGRGGSGRGFPGGRGRGGGYGGYGGRYGGGDGRGDNYGYGRGGGIWRRGRGYGGGGGGYGGGPECYTCGRVGHLARDCYQGASGGTRRRGGASGGGGGVGGCFNCGEEGHFARECPIIEK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2474 204 Gene3D - 1 75 IPR012340 -
Dere05g2474 204 CDD CSP_CDS 12 75 IPR002059 GO:0003676
Dere05g2474 204 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 Gene3D - 182 203 - -
Dere05g2474 204 Gene3D - 145 175 - -
Dere05g2474 204 PRINTS Cold shock protein signature 49 67 IPR002059 GO:0003676
Dere05g2474 204 PRINTS Cold shock protein signature 34 43 IPR002059 GO:0003676
Dere05g2474 204 PRINTS Cold shock protein signature 13 28 IPR002059 GO:0003676
Dere05g2474 204 Pfam 'Cold-shock' DNA-binding domain 12 76 IPR002059 GO:0003676
Dere05g2474 204 ProSiteProfiles Zinc finger CCHC-type profile. 186 200 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 ProSitePatterns Cold-shock (CSD) domain signature. 24 43 IPR019844 -
Dere05g2474 204 SMART csp_8 12 77 IPR011129 GO:0003676
Dere05g2474 204 ProSiteProfiles Cold-shock (CSD) domain profile. 10 76 IPR002059 GO:0003676
Dere05g2474 204 Pfam Zinc knuckle 148 162 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 Pfam Zinc knuckle 185 200 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 SUPERFAMILY Retrovirus zinc finger-like domains 139 200 IPR036875 GO:0003676|GO:0008270
Dere05g2474 204 ProSiteProfiles Zinc finger CCHC-type profile. 149 162 IPR001878 GO:0003676|GO:0008270
Dere05g2474 204 PANTHER COLD SHOCK DOMAIN PROTEIN 2 118 200 - -
Dere05g2474 204 SUPERFAMILY Nucleic acid-binding proteins 8 76 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2474 Dere-ChrDere05 35240503 35241117 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dere05g2474 CSD 4.7e-23 CL0021