Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2468 ATGAGCAAACCCAGAACCCATAGGAAACCCACCAAGCATGCCATTGCCAACCAGAACCAAAAGCCACAAAAAACAGAGAAGCAACCCTCTTGGACAGTGGTCAGAGGCCTTTTGACTTGTAGAAATGTCCAAACCCAGCAGCAGCAGAAGCAGCCGCAACAGATTCCTGAAGGGAAACAACAACCAAAGCAGAAACAAGAACAGAGAAAGCTGCAAGAACAGAGAGTCCCAGAAGATCAAAACGGCAAGAAATGTAAGAAGATGAAATGTTCAGGTTCGCTTTGTAATAACACCAGGATTACGGCTAGGCCTGAAACGGGTTGCCCGGATGCCCACAAGAAAAGGGTCTCGCTGGCTGCATGTAGCAGCAGCAACAATGATACTTCTAGCAGATCCATGAAAGCTCCTCCCCGTGAACCCAACGGTGCCATTTCTGCCTCTTCTTCTTCATTGTCTGCATCTTCTAGTTCTTCTGTCAGTGGGTCTCTTAGAGGAATGCCCTTCAGAAGATTCTCTGGTTGCTACGAGTGCCGAATGGTGGTTGACCCTGTACTGAGTTTCACAAGAGACCCTTCTCTTCGGGGTAGCATTTGTTCCTGCCCTGACTGCGGCGAGATCTTCATGAAAGCTGAAAGCTTGGAGCTTCATCAAGCTGTTAAACATGCAGTATCTGAGCTGGGTCCCGAAGATACAAGCAAGAATATAGTAGAAATCATATTCCATTCAAGCTGGCTAAAGAAACAATCCCCAGTCTGCAAAATCGACCGCATCCTTAAAGTCCACAACACCCAGAAGACGATTACCAGATTCGAAGAGTACAGAGACTCCATAAAAGCCAAAGCCACAAAGCTCACCAAGAAATACCCACGTTGCATAGCAGATGGCAACGAGCTACTCAGGTTTTACTGCACCACCTTCGTCTGCTCACTGGGTCTAAACGGATCATCCAACCTCTGCAACTCAATACCACAGTGCAACGTTTGTAGCATAATCAAGAATGGATTCAAGGTCGCCGAAGAAACGAACGGAGGAAACGGTGGAAAGGGAATATTGACGACGGCGACGAGTGGAAAGGCACACGACAAAGCCGGGGTTTCAGGGGATGACAGAAACGACAATAGGGCGATGCTGGTTTGTCGGGTGATAGCTGGCAGGGTGAAGAAGAATATGGAAGGAAGCATGGAGGAGTATGATTCGGTGGGCGGAGGTGGCGGGGCTTATTCTAATTTGGATGAGTTGTATGTGTTCAATCCTAGAGCTATATTGCCCTGTTTTGTTGTCATCTACAGAGGCTTTTGA 1299 0.4773 MSKPRTHRKPTKHAIANQNQKPQKTEKQPSWTVVRGLLTCRNVQTQQQQKQPQQIPEGKQQPKQKQEQRKLQEQRVPEDQNGKKCKKMKCSGSLCNNTRITARPETGCPDAHKKRVSLAACSSSNNDTSSRSMKAPPREPNGAISASSSSLSASSSSSVSGSLRGMPFRRFSGCYECRMVVDPVLSFTRDPSLRGSICSCPDCGEIFMKAESLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTITRFEEYRDSIKAKATKLTKKYPRCIADGNELLRFYCTTFVCSLGLNGSSNLCNSIPQCNVCSIIKNGFKVAEETNGGNGGKGILTTATSGKAHDKAGVSGDDRNDNRAMLVCRVIAGRVKKNMEGSMEEYDSVGGGGGAYSNLDELYVFNPRAILPCFVVIYRGF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2468 432 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Dere05g2468 432 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 87 429 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 62 86 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 15 30 - -
Dere05g2468 432 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
Dere05g2468 432 MobiDBLite consensus disorder prediction 119 162 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 142 162 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 43 89 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 43 61 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 1 30 - -
Dere05g2468 432 Gene3D - 222 430 - -
Dere05g2468 432 MobiDBLite consensus disorder prediction 119 135 - -
Dere05g2468 432 SUPERFAMILY ADP-ribosylation 223 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2468 Dere-ChrDere05 35202470 35203867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2468 163 430 C2H2 Transcription Factor Family AT1G75710 54.949 3.26e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g2468 None None None