Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2466 ATGGAGGATTTGCAGAGTGCTCTAAAGGATCGTAATTTAACGGTTTCCACCATCGCAGATAAGGGTCGCTGTCTCTTAGCTACGAGAGATTTTTATCCAGGAGAGGTAATTATAAGCCAAGAGCCTTACGTTTGTGTGCCAAAAAAATCTTCAGTCGAAACAAGGTGTGATGGATGTTTCACAACAAGTAAACTTAAGAAGTGTTCTGGTTGTCAAGTTGTTTGGTATTGTGGAAGCACATGCCAGAAGTCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCTGGACAAGGACAAGAGAAAATCTGTCACTCCATCCATTCGACTGATGGTAAAACTTTTTCTTCGAAGGAAGTTACAAAGTGAAAAGATTATCCCAAGCACTGCTACTGACAACTATAACCTGGTGGAGGCATTAGTGGCACACATGTCTGACATCTATGAGGAACAGCTGGTCCTGTATGCACAGATGGCTAATCTTGTAAAGTTAATACTACAGTGGCCTGAAATCAACATAAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTGAGACCCTTGGGGACAGGATTGTATCCTGTAATTTCCATAATCAACCACAGTTGCTTGCCCAATTCTGTACTGGTTTTTGAGGGAAGGTCAGCATTTGTACGTGCCTTGCAACATATACCCAAAGGTTCAGAGGTGCTGATAAGTTATATAGAGACTGCTGGAAGCACTATGACTCGGCAGAAGGCTCTTAAAGAGCAGTACCTATTCACTTGCGCATGTCCCCGCTGTGATAGAGTGTTAGCTTTGAAGGGCCAGTATGATGATATTCAAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGCTTCGTACTACAGATGGAAAAGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGACATAGAAGAGATAAAGAAGATTGCAACTGAAGTAAAATCACTATCAGAAAACGAAGCTCCTAAAATTTGTTCCACTGGCAATAATCAGGAAGCTTTTACTGTATACAAAATGATTGAGAAACTCCAATCAGAATTGTGCCATCCTTTCTCAATCAGCTTGATGCAAACTAGAGAAAAGCTTTTGAAGTTATTGATGGAGCTGGAACATTGGAGAGAAGCTCTAGCGTACTGCAAATTAACCTTACCAGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGTTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTCGGGGACACAGAGGGTGCTGTCAAATCGCTGACCAAGGCAGTGGATGTATTAAGAATCACTCATGGGACAAATACACCCTTTATGAAGGAACTCTTGATGAAGTTGGAAGAAGCTCGTGCCGAAGCCTCTTATCAACAGTCCTCCAAAGAGGAGTAG 1461 0.4141 MEDLQSALKDRNLTVSTIADKGRCLLATRDFYPGEVIISQEPYVCVPKKSSVETRCDGCFTTSKLKKCSGCQVVWYCGSTCQKSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVKLFLRRKLQSEKIIPSTATDNYNLVEALVAHMSDIYEEQLVLYAQMANLVKLILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAFVRALQHIPKGSEVLISYIETAGSTMTRQKALKEQYLFTCACPRCDRVLALKGQYDDIQESAILEGYRCKNEKCCGFLLRTTDGKGFQCQECGLVRDIEEIKKIATEVKSLSENEAPKICSTGNNQEAFTVYKMIEKLQSELCHPFSISLMQTREKLLKLLMELEHWREALAYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEGAVKSLTKAVDVLRITHGTNTPFMKELLMKLEEARAEASYQQSSKEE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2466 486 SUPERFAMILY TPR-like 350 451 IPR011990 GO:0005515
Dere05g2466 486 SUPERFAMILY SET domain 11 247 IPR046341 -
Dere05g2466 486 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Dere05g2466 486 Gene3D - 55 105 - -
Dere05g2466 486 Gene3D - 106 190 - -
Dere05g2466 486 Pfam SET domain 22 247 IPR001214 GO:0005515
Dere05g2466 486 Gene3D SET domain 24 274 IPR046341 -
Dere05g2466 486 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 472 - -
Dere05g2466 486 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Dere05g2466 486 Gene3D Tetratricopeptide repeat domain 406 485 IPR011990 GO:0005515
Dere05g2466 486 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Dere05g2466 486 SMART set_7 11 254 IPR001214 GO:0005515
Dere05g2466 486 Pfam MYND finger 56 93 IPR002893 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere05g2466 SET 4.1e-15 No_clan