LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g2453	ATGCATCACCTACCTCGATTTTTCGGTCATAGAAAGCAAGCGAAGGGCATGGATCCGAATAAAGCCCGAAGAAAACACCAGCTCGATCGTCGCAATGCCGTCAAGTACGTTGAGTATGATGCTGGGTCGTCTTCGTCGTCGCTGGACGACTCGTGCGGATCGCTCTACACTAGTTCAATGGAGTTCTATGATCGAACCAGCTTCCGAATTGAGGGATTTGACGGTGAGATTGATCGCATATGCAGGGGTTTAGGGCTTTCGGGACCAGAAGACTTTGCCATTCCAGCGGCGGCGTGGGAGGCTATGAAGACTAGATCATCCTCGGATATTACGCGGAGTTTGAAGATGAACGAGTTGGACGGTCAGGAGAAGGAGGAATCAAAGGAGAAGAGGCCAATAGTGGGTGAATTGGGTAACAGATTCGAAGAGAGGGTTACAGTTAGAGGCGTAGCTGACTCAACCCAAGATGAGCCTGCCGAGACTAGTGGGTGCTGCATTGCTGGTGGTGGTGTTTGTGGAGCTGGTGTCGGAGGAGGTATTAAGGGAGTCCGTCCGCCGATGCTTAAGCCACCGCCTGGGGTGAGGCTCCCAGTTATTGATAATACTTGCTCCACTTGGGACATTTTAAGGGATTTCGCTCCGCAAGGTGAAAGACAATCTTCAGAAAATTACGAGGAGTTGAACTCTACCGATGATAACGAAGTACTTCGGAGGGAATTGGGGAATAGAGAAGTTAAAGAAGTTAAAGAACAAGAAGAGCAGGTAGTTGAAGTCAGGGTAAGTCCGAAGGGACAAGAGTGTGATAATGCAACAAGGATTGCAGAGATTGTTGCTCAGCTTTCGGCATCGTGTTCGTTTACTACTTCAAATGAAGATGATTCTTCTAGCACTTTCACGGATCCTCCGTCGAATAGCATATCTCCTAACGGAAAATTCAGGCGTATAATTACGAACTGGGAAAAGGGTGAGCTTTTGGGACGTGGTTCGTTTGGGTCAGTTTATGAAGGAATATCTGGAGATGGATTCTTTTTTGCTGTAAAGGAAGTTTCACTACTTGATCAAGGTGATCAGGGAAGACAAAGTGTCTATTACCTGGAGCAGGAGATCGCCCTTTTGAGCCAGTTTGAACATGAGAATATAGTTCAATACTATGGCACAGAAATGGATCAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACTAAAGGTTCCCTTGCAAGCCTCTATCAGCGGTATAATCTTCGAGACTCCCAAGTATCTGCCTACACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATAGAAATGTGATTCACAGGGATATTAAATGTGCAAATATACTGGTAGATGCAAATGGATCTGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAACTGAATGATATTAAGTCGTGCAGGGGGACAGCATTCTGGATGGCACCTGAGGTTGTGAAAGGAAAGAATCAAGGATATGGACTTCCGGCAGACATATGGAGTCTGGGGTGCACTGTGTTGGAGATGTTAACAGGCCAAATTCCGTACTCTCATTTGGAATGTATGCAGGCACTCTTTAGAATTGGAAAGGGTGAGCGCCCTCCTGTTCCTGATTCTCTTTCAAGAGATGCGCGAGATTTTATCCTGCAGTGCGTTCAAGTCAATCCAGATGATCGTCCCACTGCTGCTCAGCTCTTAAACCATCCATTTGTTCGAAAGCCACTTTTTACATTCTCTGGCTCTGCATCTCCTTATTTACCTGGCAGAAGGGGTTGA	1779	0.4604	MHHLPRFFGHRKQAKGMDPNKARRKHQLDRRNAVKYVEYDAGSSSSSLDDSCGSLYTSSMEFYDRTSFRIEGFDGEIDRICRGLGLSGPEDFAIPAAAWEAMKTRSSSDITRSLKMNELDGQEKEESKEKRPIVGELGNRFEERVTVRGVADSTQDEPAETSGCCIAGGGVCGAGVGGGIKGVRPPMLKPPPGVRLPVIDNTCSTWDILRDFAPQGERQSSENYEELNSTDDNEVLRRELGNREVKEVKEQEEQVVEVRVSPKGQECDNATRIAEIVAQLSASCSFTTSNEDDSSSTFTDPPSNSISPNGKFRRIITNWEKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQGDQGRQSVYYLEQEIALLSQFEHENIVQYYGTEMDQSKLYIFLELVTKGSLASLYQRYNLRDSQVSAYTRQILHGLKYLHDRNVIHRDIKCANILVDANGSVKLADFGLAKATKLNDIKSCRGTAFWMAPEVVKGKNQGYGLPADIWSLGCTVLEMLTGQIPYSHLECMQALFRIGKGERPPVPDSLSRDARDFILQCVQVNPDDRPTAAQLLNHPFVRKPLFTFSGSASPYLPGRRG	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g2453	592	SUPERFAMILY	Protein kinase-like (PK-like)	294	578	IPR011009	-
	Dere05g2453	592	MobiDBLite	consensus disorder prediction	1	28	-	-
	Dere05g2453	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	438	450	IPR008271	GO:0004672\|GO:0006468
	Dere05g2453	592	Pfam	Protein kinase domain	320	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2453	592	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	195	578	-	-
	Dere05g2453	592	FunFam	Mitogen-activated protein kinase 1, putative, expressed	317	584	-	-
	Dere05g2453	592	MobiDBLite	consensus disorder prediction	11	28	-	-
	Dere05g2453	592	ProSitePatterns	Protein kinases ATP-binding region signature.	325	347	IPR017441	GO:0005524
	Dere05g2453	592	MobiDBLite	consensus disorder prediction	289	309	-	-
	Dere05g2453	592	ProSiteProfiles	Protein kinase domain profile.	319	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2453	592	SMART	serkin_6	319	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2453	592	Gene3D	Transferase(Phosphotransferase) domain 1	316	582	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g2453	Dere-ChrDere05	35020184	35032083	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g2453	1	576	MAP Kinase Kinase Kinase	AT4G08500	50.886	9.18e-178	514

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Dere05g2453		Pkinase	3.1e-69	CL0016