Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2446 ATGGCCTTACAGAATATTGGTGCTTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCAAAAATGATAACCAAGATAGAAGGTAGAGGAAATGGAATCAGGACTAATGTGGTTAACATGGTTGACATTGCAAAGGCCCTTGCTAGACCTGCATCTTATATTACGAAGTATTTTGGCTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAGACTGGAACTTCTCTTGTGAACGGGGCCCATGACACCGCAAAGCTTGCAGGGCTCCTTGAGAATTTCATAAAGAAATATGTCCAATGTTATGGTTGTGGGAACCCTGAAACTGAGATAGTTATTACAAAGGCGCAGATGATCACCCTAAAATGTGCTGCCTGTGGGTTTGTCTCGGATGTTGATATGAGGGATAAGCTTTCGACATTTATACTTAAGAATCCACCTGAGCAGAAGAAGGGATTGAAGGACAAGAAGGCCATGAGAAGGGCTGAAAAGGAGCGTCTTAAAGAGGGTGAGGCAGTTGATGAGGAGCAAAGGAAGCTAAAAAAGGAAGGGAAAAAGAAAGGAACTGTGGCTAACTCAAAGGATGCCTCTAAAGCATCAACGAAGAAGAAAACCACTGGTTCTGATGAGGAGCACTCCCCTGCTTATAATCATGCTGATGAAAATGATCAATCTGGTGGTGATGGGGATGATGATGGTGATGATGTGCAATGGCAGACAGACACTTCATTGGAGGCAGCTCGGCAGCGCATCCAGGAGCAGCTAAATGCTGTTACTGCTGACATGGTCATGCTTTCTACCAGCAGTGAAGGGAAGAAGAAGTCACCAAAGGGTTCTCCAACCCGTGAAGTTGATTCTGAGGTTAAAAAGCATGGAAATGGTGCTCTTGCTGGCATCCATGGAAGTCTTGTTGAGGAGATAACAGACTTTTTGAAGAAAGGTTCTTCTGCTGGTCAGCTCAAATCTTTTCTCGGTTCTCTTTCTGGAACACCCCAAGAGGTTGTTAACGCTTTATTGGAAGCTCTTTTAGAGGATGTTGGCAAAGGATTTGCCAAGGTAGCATTGAAAAAGAAGAATTACATTGCAGTAGCTGTGCAATTTGGGGGATCTCAAACAGTTTTGTTGCGTGCCATAGAGTGTTTTTGCGGGAAAGCAAGCACTGAGGCAGTGAAGGAGGTTGCATTGGTCTTAAAGGATCTCTACGACTCTGATGTGTTGGAGGAAGAGTCTATACTTGAATGGTACCAAAAGGGACTGGTTGGCAGCAACAGGAGCTCGCAAATGTGGAAAAGCATCAAGCCCTTCGTTGAGTGGCTCCGGAATGCGGAGTCTGAATCAGAAGAAGAATGA 1350 0.4444 MALQNIGASNRDDAFYRYKMPKMITKIEGRGNGIRTNVVNMVDIAKALARPASYITKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIVITKAQMITLKCAACGFVSDVDMRDKLSTFILKNPPEQKKGLKDKKAMRRAEKERLKEGEAVDEEQRKLKKEGKKKGTVANSKDASKASTKKKTTGSDEEHSPAYNHADENDQSGGDGDDDGDDVQWQTDTSLEAARQRIQEQLNAVTADMVMLSTSSEGKKKSPKGSPTREVDSEVKKHGNGALAGIHGSLVEEITDFLKKGSSAGQLKSFLGSLSGTPQEVVNALLEALLEDVGKGFAKVALKKKNYIAVAVQFGGSQTVLLRAIECFCGKASTEAVKEVALVLKDLYDSDVLEEESILEWYQKGLVGSNRSSQMWKSIKPFVEWLRNAESESEEE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2446 449 Pfam eIF4-gamma/eIF5/eIF2-epsilon 371 449 IPR003307 GO:0005515
Dere05g2446 449 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Dere05g2446 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 448 IPR045196 GO:0003743|GO:0006413
Dere05g2446 449 SMART 542_3 358 445 IPR003307 GO:0005515
Dere05g2446 449 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Dere05g2446 449 Gene3D - 105 145 - -
Dere05g2446 449 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Dere05g2446 449 MobiDBLite consensus disorder prediction 267 289 - -
Dere05g2446 449 MobiDBLite consensus disorder prediction 148 218 - -
Dere05g2446 449 Coils Coil 159 179 - -
Dere05g2446 449 CDD W2_eIF5 300 447 - -
Dere05g2446 449 SUPERFAMILY ARM repeat 301 443 IPR016024 -
Dere05g2446 449 ProSiteProfiles W2 domain profile. 293 449 IPR003307 GO:0005515
Dere05g2446 449 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Dere05g2446 449 Gene3D - 2 104 - -
Dere05g2446 449 Gene3D - 302 449 - -
Dere05g2446 449 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Dere05g2446 449 MobiDBLite consensus disorder prediction 147 237 - -
Dere05g2446 449 MobiDBLite consensus disorder prediction 275 289 - -
Dere05g2446 449 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2446 Dere-ChrDere05 34973353 34974702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2446 1 442 Eukaryotic Initiation Factors Gene Family AT1G77840 63.371 0.0 530