Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2444 ATGCCTCCGCCACCGTCACGGCAACAACCGCCGCAGCCTCACCGTCTCCACCCCAAAATTTGGCGAGCATGCGCCGGTGCATCTGTTCAAATCCCTACTTTGCATTCTAGGGTTTATTATTTCCCTCAAGGCCATTTGGAGCAAGCCTCGTCGTCTCCTTCATGCCTCTCGCCTCTTCTGCTGTCCAGGCCCCTCATTCTCTGTGGCATCTCCTCGGTTGAATTCCTTGCTGATCCTGTGACGGATGAGGTCTTTGCTAAGCTTCTCCTCCGTCCGCTCAATGATTTCACCGCAACTCGTGACCTCCTTCATCCCATCTGCGATTCCCCAGAAACACTGGGCAATGAGAGGGTCGTGTCATTCGCCAAGATTCTGACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGACTCTATCTTCCCGCCGCTGAACTTTCAGTCCGACCGGCCGAACCAGATACTGTTCGTCACTGACGTTCACGGCGTTGTCTGGGAATTTTGCCACATTTATCGAGGGACACCTAGGCGGCACTTGCTTACTACTGGATGGAGCAAGTTTGTCAATCACAAGAAATTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAACTCCAAAGAGAAGATGTTCGTCGGGATTCGCAGAGCGGCGCGATTCACTGCAAGAAATGACGGTGATTACACCAAAATGTTCTCCGTGATGGGTGGCGTAAGAACCAAGGTCGAAGATGAGCAGCAGGAAGAGTGCTATACTTTTAGAGGGTTTTCGAGGAACGGGAAGGGGAAGTTGTCCGCTAAAGCAGTTGTGCACGCAGCAGAATCAGCTGCACAAAATATGCCGTTCGAAGTTGTGTACTATCCAAGGGCAGGGTGGTCAGACTTTGTGTTGAAGGCGGAGGTTGTGGAGGAAGCGCTGAAAGTCGAGTGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGAACAGTTTCTTCGGCATCTGCTCCTGATATTGGGCGTTGGCGGGGTTCTCCTTGGCGAATGCTTCAGATTACATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGCCCTTGGCAGGTTGAACATATTTCCCCCACACCTCTGGTTCATACAGCATTTCCGCCTGCAAAAAAGTTTAGAGCTGCTCACTATACTAGGGTGCCAATTGGTAGAGAGGAAGCGCCCTTGTTTACCATGACAAGATTCACTAATTCAACATTGGGACAATTGAATCAATCACTGTTGAATTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAACTTTCCCAATTTCCTAAGTTACAATACTCATCTGTGTAGTGCTAGTTCCTTTGGGATTAACACAGTGCCGAAGTTCAAAACTGTGTCAACAGATCTAAACATAGGCAGTTCTCAATCTGACAACATGTTACCAGATAGCCAGAGAAGCTTTCGTTCCTCTGGCACAGAATTTGTTGAGACCTATTGCTGCAACTCAACAAAACTTGGTGCTGGCTCATTTCTACTATTTGGTAAGATGATTCAAATGAATCAGCCCGTTGAAAAAGGTTTGTATGATGCTGATTGCACTGAAGTTGATGGTAACAAGGGTTGCAATACTGAAGTGATTGATGACCCGTTGGATCATTCAACTTATTCGAAATTGCTCAACAGGCTTGATGTCCAATGTCAAAGCGTCGATAGTTGA 1773 0.4805 MPPPPSRQQPPQPHRLHPKIWRACAGASVQIPTLHSRVYYFPQGHLEQASSSPSCLSPLLLSRPLILCGISSVEFLADPVTDEVFAKLLLRPLNDFTATRDLLHPICDSPETLGNERVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFQSDRPNQILFVTDVHGVVWEFCHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSKEKMFVGIRRAARFTARNDGDYTKMFSVMGGVRTKVEDEQQEECYTFRGFSRNGKGKLSAKAVVHAAESAAQNMPFEVVYYPRAGWSDFVLKAEVVEEALKVEWTPGMRVKMAMETEDSSRMTWFQGTVSSASAPDIGRWRGSPWRMLQITWDEPEVLQNAKRVSPWQVEHISPTPLVHTAFPPAKKFRAAHYTRVPIGREEAPLFTMTRFTNSTLGQLNQSLLNYDTFPAGMQGARHDLFSVSNFPNFLSYNTHLCSASSFGINTVPKFKTVSTDLNIGSSQSDNMLPDSQRSFRSSGTEFVETYCCNSTKLGAGSFLLFGKMIQMNQPVEKGLYDADCTEVDGNKGCNTEVIDDPLDHSTYSKLLNRLDVQCQSVDS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2444 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 543 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere05g2444 590 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Dere05g2444 590 Gene3D - 118 223 IPR015300 -
Dere05g2444 590 FunFam Auxin response factor 119 223 - -
Dere05g2444 590 SMART B3_2 121 223 IPR003340 GO:0003677
Dere05g2444 590 SUPERFAMILY DNA-binding pseudobarrel domain 114 234 IPR015300 -
Dere05g2444 590 Gene3D - 314 386 - -
Dere05g2444 590 CDD B3_DNA 120 221 IPR003340 GO:0003677
Dere05g2444 590 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Dere05g2444 590 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2444 Dere-ChrDere05 34960201 34963880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2444 4 572 B3 DNA Binding Superfamily AT1G77850 48.962 4.74e-174 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere05g2444 B3 1.9e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2444 05 34960201 34963880 Dere04g0966 04 10251292 10254902 CCT
Dere05g2444 05 34960201 34963880 Dere05g2444 05 34960201 34963880 ECH