Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2443 ATGCCTCCGCCAATGTCACGGCAACCACCGCCACAGCCTCGCCGGCTTCATCCGAAGCTTTGGCGAGCATGCGCCGGCACGTCGGTTCAAATCCCGACGTTGCATTCTAGGGTTTATTATTTCCCTCAAGGCCATTTGGAGCAAGCCTACTCGCCTCCTAAATGCCTCTCGCCTCTTCTCCTGTCCAGGCCCCTCATTCCCTGTCGCGTCTCCTCGGTTGAATTCTTTGCTGATACTGTCACGGATGAGGTCTTTGCTAAGCTTCTCCTCCATCCGCTCAGTGATTTCACCGCCATTCGTGACCACCTTCATTCGGTCTGCGAATCCGCAGAAGCACCGAACGATGACAATGTCGTGTCGTTTGTCAAGATTCTGACTCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGATTCCATCTTTCCGCCGCTTAACTTCCAATTAGATCCGCCGAACCAGACATTGTCCATCACTGACGTTCACGGCGTCGTCTGGGAGTTCCGGCACATTTATCGAGGCACGCCTAGGCGGCATTTGCTCACTACTGGGTGGAGCAAGTTTGTCAATCACAAAAAGTTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAACTCCAAGAAGGAGATGTTCGTTGGGATTCGCAGAGCGGTGCGATTCAATGCACTAAATGGTCGCAACTGCGCCAGAAGGTGCTCCGAAATAGGTGGCGTGAGAACTAAGGTAGATGAGGAGCAGCAGGAAGAGTGCTACACTGGTTCCAGAAAATTTTCAAGGGATGGGAGGGGGAAGTTGTCCACCAAGGAAGTTGTGGAGGCGGCAGAAGCGGCAGCACAAAATAAGCCGTTCGAAGTTGTGTATTATCCTAGGGCAGGGTGGTCGGAGTTTGTGTTGAAGGCAGAGGTTGTGGAGGAAGCGCTGAAAGTTGGGTGGACTCCTGGAATGAGAGTCAAAATGGCCATGGAGACAGAGGTTTCGTCCAAGATGACCTGGTCTCAGGGGACAGTCTATTCGGCATCTGCTTCTCCTGATAATGGGCATTGGCGGGGTTCTCCTTGGCGTACGCTTCAGTTGACTAATATTTGCCTCTTCCCATTTTTCATGTCTATATGTAAGATCACATGGGATGAGCCTGAAGTCTTGCAGAATGCAAAGCTAGTCAGCCCTTGGCAGGTTGAACATATTTCTCCCTCACCTCTACTTCATACAGGATTTCCCCCTGCAAAAAGGCTTAGAGCTGCTACGTATCCTGGGGTGCCAATTGATAAAGAGGACTTCTTTACTATGACAAGATTTACTAATTCAACAATGGGATACTTGAAGCAATCATTGTTGAATGATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATTTATTTTCTGCGTCAAGATTTTCAAACTTTCTTAGTGATAATACTCATCTTTGTACCGCTAGTTCCTTTGAGAACAATGCAGTGCCAAAGTCAAAAACTGTGTCAACAGATTTACACATAGGCAGTTCTCAATCTGGCAACTTGTCATTAGATAGCCAGAGTAGTATTCGTTCCATTGGCACGGAATTTGTTGGGACGCATGGCTGTAACTCAAGAAAGCTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGATGATTCAAATGAATCTGCCTATTGAAAGTGGTTTGGATGGTGCTGAATGCAGTGGAAATGATGGTGATAAGGGTTGCAATGTAACTGAAGGTATTGACAACCCACTGGATCATTCAACATACTCAAAAATGGTCAACAGGCTTGATGTTCAATGCCATAAAGCATCACCGGTTGAGGCATGTTATTTCTGA 1839 0.4791 MPPPMSRQPPPQPRRLHPKLWRACAGTSVQIPTLHSRVYYFPQGHLEQAYSPPKCLSPLLLSRPLIPCRVSSVEFFADTVTDEVFAKLLLHPLSDFTAIRDHLHSVCESAEAPNDDNVVSFVKILTPSDANNGGGFSVPRFCADSIFPPLNFQLDPPNQTLSITDVHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSKKEMFVGIRRAVRFNALNGRNCARRCSEIGGVRTKVDEEQQEECYTGSRKFSRDGRGKLSTKEVVEAAEAAAQNKPFEVVYYPRAGWSEFVLKAEVVEEALKVGWTPGMRVKMAMETEVSSKMTWSQGTVYSASASPDNGHWRGSPWRTLQLTNICLFPFFMSICKITWDEPEVLQNAKLVSPWQVEHISPSPLLHTGFPPAKRLRAATYPGVPIDKEDFFTMTRFTNSTMGYLKQSLLNDGTFPAGMQGARHDLFSASRFSNFLSDNTHLCTASSFENNAVPKSKTVSTDLHIGSSQSGNLSLDSQSSIRSIGTEFVGTHGCNSRKLGAGSFQLFGKMIQMNLPIESGLDGAECSGNDGDKGCNVTEGIDNPLDHSTYSKMVNRLDVQCHKASPVEACYF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2443 612 Pfam Auxin response factor 278 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere05g2443 612 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Dere05g2443 612 Gene3D - 316 403 - -
Dere05g2443 612 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Dere05g2443 612 SMART B3_2 121 223 IPR003340 GO:0003677
Dere05g2443 612 CDD B3_DNA 120 221 IPR003340 GO:0003677
Dere05g2443 612 SUPERFAMILY DNA-binding pseudobarrel domain 110 232 IPR015300 -
Dere05g2443 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere05g2443 612 FunFam Auxin response factor 119 223 - -
Dere05g2443 612 Gene3D - 118 223 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2443 Dere-ChrDere05 34937647 34941795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2443 1 579 B3 DNA Binding Superfamily AT1G77850 47.019 1.79e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere05g2443 B3 5.6e-24 CL0405