Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2424 ATGGGTCGTGTTAAATTGGAGATTAAGAGAATAGAGAACCGCATAAATCGTCAAGTTACTTTCTCGAAGCGCAGAAATGGTCTCATTAAGAAAGCCTACGAGTTATCCATTCTTTGTGACATTGATATTGCTCTTATTATGTTTTCTACATCAGGCAATGTCAGTCACTTTTCCGGCAGAAGAAGCATCGAGGATGTTTTCACTCGTTACATCAATTTACCCGACCAAGAAAGAGATGGTGCTATTGCCTTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATTTGCTGAGGACCCTTCAACAACTGAAGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAGCTCCAACAAGAAGTTAGTAGATTACAGCAACAGCTTCAAATGGCCGAGGAACAGATAAGGATATTCGAACCCGACCCATTAAAGATGACATCTACGGCAGAGCTTGAATCTAGCGAAAAGCATCTCGTAGATACATTAACACGAGTCATGCAAAGGAAGGAATATCTGTTGAGCAACCATTTATCTTCATATGACCCATCTGGCATACAGGGGATGCCGACCTCTTTCGAGAATGTAGCCTGGTTGCCAGACGGTGGTCAGAACCATCCCCACATGTTTGATACATCAGTTTCTTTGGATCCGCTCAGGGAGTTGTCGTCGACGGTGTACGATCCATTTTCGCAAGGGACAAGTTCAAACGCTGACCCACGAAGTATAGGAGAGTGCCACGTGGGGAGTCCAACGGATGGAAACCTTCAAGCGTGGCCTCAAGGATACACATTATATCCTTCTATACAGCAGGAGATGGTGGGAGCAGAGATGCAAGATATGATGCCACATGGGCAGGTATTCCACAATATCACCTTCTCTGTGTTTGAAATATTTGATAAGTGGTATGGAGAAGGGTACCCACTTGCGGAGAGCAAGAAGATGTTAAGACTGTTGATGGCCATATATTAATTGGCTCAAGCAATTCTTGAGATGTTTGAAGCATATGGAAATGTTGATGCTGTTGGGAAAAGTTATACCATCATTAGAAAGGGATCTCCAATTCTTTCTACTACTCTTCATGTTGCTGGCTTGCTTATTAAACTAAATGCAGATTGGGACTAG 1158 0.4344 MGRVKLEIKRIENRINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSTSGNVSHFSGRRSIEDVFTRYINLPDQERDGAIAFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIFEPDPLKMTSTAELESSEKHLVDTLTRVMQRKEYLLSNHLSSYDPSGIQGMPTSFENVAWLPDGGQNHPHMFDTSVSLDPLRELSSTVYDPFSQGTSSNADPRSIGECHVGSPTDGNLQAWPQGYTLYPSIQQEMVGAEMQDMMPHGQVFHNITFSVFEIFDKWYGEGYPLAESKKMLRLLMAIYXLAQAILEMFEAYGNVDAVGKSYTIIRKGSPILSTTLHVAGLLIKLNADWD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2424 385 MobiDBLite consensus disorder prediction 238 252 - -
Dere05g2424 385 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dere05g2424 385 FunFam MADS-box transcription factor 41 13 92 - -
Dere05g2424 385 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Dere05g2424 385 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dere05g2424 385 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 Gene3D - 14 89 IPR036879 GO:0003677|GO:0046983
Dere05g2424 385 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 MobiDBLite consensus disorder prediction 238 261 - -
Dere05g2424 385 Coils Coil 126 146 - -
Dere05g2424 385 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere05g2424 385 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2424 Dere-ChrDere05 34654197 34661761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2424 1 297 Type I MADS-box Gene Family AT1G22130 59.477 1.81e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere05g2424 SRF-TF 5.6e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2424 05 34654197 34661761 Dere05g2424 05 34654197 34661761 ECH