Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2423 ATGTCACCGGCGAATTCTCCGTGCGCAGCGTGCAAGATTCTGAGGAGGAAATGCACCCAAGACTGCGTGTTCGCGCCGTATTTTCCGCGGGACAACCCTCAGAGGTTTTCTTACGTCCACAAGGTGTTCGGCGCCAGCAATGTGGCTAAGATTCTGAGCGACCTCAACCCCGCACAGCGCGAAGACGCCGTCAAATCATTGGCCTACGAAGCGGAGGCCCGTCTCCGGGACCCTGTCTATGGTTGCGTGGGCGTCGTATCCGTTCTCCAGCACAGGCTCAAGCAGCTTCAAGCTCAACTCCTTGATGCCAAGCAAGAGCTCGCCACCTACGTCGGACCTCACCCCTCGCTCCCTGTCTTGCAACCTCCTGGGGCAGCGGCGGCTTCCTCTGTTTTCACCCCCAATGTGATGCCGCCGGTGATCATGGGGATTCCGACGAATGCTGGCCAATTGTCGATTTGGGACCCTCAGCAGAATCAAATCTTTGAGGCTCATGCTCAGCATTTGGCCGCTGCTATGGCGGCCACAGAGCAACCTGAGATGATTCAACAAGGGCTTTTGCGACTTAACGATACTTCGGGTTCTGGGAGTGGGGTCATCGACATGTCGTCTTCTGCTGCGATGTTCCCTTCCATGGTTCTCGGTCCCGTTGCTAATCCTTTTCACATTAACCAGACTCCGCAACCAGAACACCATCATTCACTTCACCACGAGCTTCAGGCGCAGCTCTTGCTCACAACTCAGCAACCCGAGCCCCAATCCCATCAATCGCCGCTATCCTCTTCCCAGCCCAAGTCGGAAGGCGAGGAGCCTAGGAACATTGGTCCATCTTGTTGA 837 0.5615 MSPANSPCAACKILRRKCTQDCVFAPYFPRDNPQRFSYVHKVFGASNVAKILSDLNPAQREDAVKSLAYEAEARLRDPVYGCVGVVSVLQHRLKQLQAQLLDAKQELATYVGPHPSLPVLQPPGAAAASSVFTPNVMPPVIMGIPTNAGQLSIWDPQQNQIFEAHAQHLAAAMAATEQPEMIQQGLLRLNDTSGSGSGVIDMSSSAAMFPSMVLGPVANPFHINQTPQPEHHHSLHHELQAQLLLTTQQPEPQSHQSPLSSSQPKSEGEEPRNIGPSC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2423 278 Coils Coil 86 106 - -
Dere05g2423 278 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 246 - -
Dere05g2423 278 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Dere05g2423 278 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Dere05g2423 278 MobiDBLite consensus disorder prediction 248 278 - -
Dere05g2423 278 MobiDBLite consensus disorder prediction 248 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2423 Dere-ChrDere05 34649679 34650515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2423 1 215 AS2 family AT5G66870 48.207 2.76e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g2423 LOB 2e-41 No_clan