Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2410 ATGGAAGTTATGGCAGCTACGATGGATTTCTACAGTAGCAGAGCACTTCAGTCGGATCCCTTCAGGGGGGAGTTAATGGAAGTTCTTGAACCTTTTATGAAGAGTCCTTCCACAACTCCATCCCCCTCCGCAGCCTCATCTCCTTGTTCAAATTCCTCTCTACCTTCTACCTCCTACTCTCCTTCCTCCAACTACGACTGCTTCTTATCATCTCCATCACTCCCTTCACAGCTCAGTTTTTACTCAGACGGTTGCGCCACATCGATGACTCCTGTATTAGCCGATGGGTTATCGAACAGCCAAAACATAATCGGTTTCGGGCAACCAAGCTCCCTAATTGGCCTCAACAACCTGACCCCGTCTCAGATTAACCAGATCCAAACCCAGATCCAGCTCCAGAATCAGCAGAACCTGTGTTGGCAGCATAGTAGCAGTACTAGCCTCGGGTTCTTGAGTCCCAAACCTATTCCCATGAAGCACACGGGTTTGCCTCCTAAACCCACTAAGCTCTACAGAGGTGTTAGGCAACGTCACTGGGGGAAATGGGTCGCCGAGATCAGACTACCTAAGAACCGCACGCGCCTCTGGCTTGGTACCTTTGACACCGCCGAGGAAGCTGCCCTCGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCTAGGCTTAACTTTCCCAATCTCCGACACCGTGGTTCCTGTGTCGGCGGAGAATTCGGGGAGTACAAGCCTCTTCACTCCTCTGTCGACGCTAAGCTTGAAGCAATCTGTGAAAGCTTGGCCGATATGCAGAAACAGGGGAAGTCAGGGAAGCCGATGAGCTCATCTAAGAGGTCAACGGGGCGGTCGAAGTCGGGTTCAAAGGAAGCTCAGACGGTGATTAGCAAAGCCGATCCGAAGGAAGAAAGTTCATCGTCGACGGCCGTGACGGAAAGCGAGGGATCTGCGGGTTCTTCTCCTCTGTCGGATCTCACCTTCGCGGATTTGATGGAGCCTCAGTGGGATGGTTCTTCGGATAATTTCAATCTGGAGAAGTACCCATCTAATGAGATTGATTGGTCATCGCTGTGA 1074 0.5149 MEVMAATMDFYSSRALQSDPFRGELMEVLEPFMKSPSTTPSPSAASSPCSNSSLPSTSYSPSSNYDCFLSSPSLPSQLSFYSDGCATSMTPVLADGLSNSQNIIGFGQPSSLIGLNNLTPSQINQIQTQIQLQNQQNLCWQHSSSTSLGFLSPKPIPMKHTGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHRGSCVGGEFGEYKPLHSSVDAKLEAICESLADMQKQGKSGKPMSSSKRSTGRSKSGSKEAQTVISKADPKEESSSSTAVTESEGSAGSSPLSDLTFADLMEPQWDGSSDNFNLEKYPSNEIDWSSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2410 357 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Dere05g2410 357 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Dere05g2410 357 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
Dere05g2410 357 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Dere05g2410 357 MobiDBLite consensus disorder prediction 34 53 - -
Dere05g2410 357 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677
Dere05g2410 357 MobiDBLite consensus disorder prediction 336 357 - -
Dere05g2410 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 357 - -
Dere05g2410 357 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Dere05g2410 357 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700|GO:0006355
Dere05g2410 357 MobiDBLite consensus disorder prediction 33 53 - -
Dere05g2410 357 MobiDBLite consensus disorder prediction 269 323 - -
Dere05g2410 357 CDD AP2 169 229 IPR001471 GO:0003700|GO:0006355
Dere05g2410 357 MobiDBLite consensus disorder prediction 264 357 - -
Dere05g2410 357 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2410 Dere-ChrDere05 34500201 34501274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2410 4 357 AP2-EREBP Transcription Factor Family AT1G78080 52.910 1.74e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g2410 AP2 8.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2410 05 34500201 34501274 Dere04g0926 04 9702314 9703381 CCT