Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2407 ATGTCTCCCAAAATGTTCAACGGCCTTGTCTCCCTGTTTCTGAAGAACACTTCCCATTCCCATCGACTCCCCAGCTCCTACTCAATTTCCCTCTTCTTCTCCTCCACCCCCACCAAGACCACTAGTTCGAATCCTCGTATTAAAATGTTCGATTACTTAATCAGTGAACACAATTTCTCCATAGAGGCTGCTAAGAGAGCCTCATCTAACATTTTGCATGTTAGAAAACCCGAAAGGGCAAATTCTATAATTGCTTTATTCAAGCAAATTGGTTTCTCCCAAACTCATATGGAAGATGTTGTCGGAAGATTTCCAGAAGTTCTCTCTGCCAGTCTTGACAACGTTGTTAGACCCAAAATCAAAGTTTTCCAGGACTTAGGCTTTGCCCCTGCTGATATGGCTGATCTTCTGTCCAATGATCCGTTGCTTCTTAGGAGGAGCGTGGAAAATCAACTTGGACCGTCAATTATGGTGTTGAAGAACGTATTGGGTTCAAATGAAGAAGTCTGTAGGCTCTTAAAGCGATCTGATTGGTTTCTGAAACATGATTTAGAGAAAACTATGTTGCCTATTATTGAATACTTGACAAGTATCGGAATAAGCTCTTCACAAATTGTAAAATACTTATTCCATTTCCCTAGGTTTTTTCTGCTTAAACCAGAGAGCATTCCCGGATACGTTAGAAGAGTAGATGAAATGGGCTTTAATAGGAAATCTAATATGTATCTACCTGCAATACGTGTTATAAGTTCAATGTCTAAAGAGATTTGGCATCTGAAATTGAAGGTGTTCCAGAGCTTGGGGCTTTCTGAAAATGATATTCTGGTTCTCTTTAGGAGGTTGCCCATGGCGTTTGCTGTGTCCTCGGGGAAAATTCAAGAGGTGACAGAGCTGCTACTGAGTTCAGGAAAGTGTGATATGTCATATATAGTTACGCACCCACAGTTGCTTTTATGCAGTGTTGAGCGCAGGTTGAAACCTCGACTCCAAATTATAAATATCTTGGAAAAGAAAAAATTACTCCAGGATACACTTTCTTTAAGTACAATTTGTAGACTGTCTGATAAAAAGTTTTCAAGTAGGTTTGTGTCACCTTATTCAGTAGAAGAACTAAATGTGAGTATTCGGAGCTTGTAA 1137 0.3975 MSPKMFNGLVSLFLKNTSHSHRLPSSYSISLFFSSTPTKTTSSNPRIKMFDYLISEHNFSIEAAKRASSNILHVRKPERANSIIALFKQIGFSQTHMEDVVGRFPEVLSASLDNVVRPKIKVFQDLGFAPADMADLLSNDPLLLRRSVENQLGPSIMVLKNVLGSNEEVCRLLKRSDWFLKHDLEKTMLPIIEYLTSIGISSSQIVKYLFHFPRFFLLKPESIPGYVRRVDEMGFNRKSNMYLPAIRVISSMSKEIWHLKLKVFQSLGLSENDILVLFRRLPMAFAVSSGKIQEVTELLLSSGKCDMSYIVTHPQLLLCSVERRLKPRLQIINILEKKKLLQDTLSLSTICRLSDKKFSSRFVSPYSVEELNVSIRSL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2407 378 SMART mt_12 275 305 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 SMART mt_12 134 166 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 PANTHER CGI-12 PROTEIN-RELATED 48 369 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 FunFam Mitochondrial transcription termination factor-like 148 369 - -
Dere05g2407 378 Gene3D Transcription termination factor 3, mitochondrial 143 374 IPR038538 -
Dere05g2407 378 Pfam mTERF 252 358 IPR003690 GO:0003690|GO:0006355
Dere05g2407 378 Pfam mTERF 48 222 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2407 Dere-ChrDere05 34479168 34480304 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere05g2407 mTERF 5.8e-19 No_clan