Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2405 ATGACGAACCAGAATGTGATGGCTCCTGATGTGAAATCACGAATCAACACCGTTATTGCGGTGTTGATGTCTGTGTCCAATTCAACTATGTTTCCCGGCGCAGGAGTGCCAGAATCTATGGCACTGCTTCATGGGTTTTTGGGGATATCCCAGAAAAAGCTAATGAAAAGGCTCAACGATGGAGAAGGGAAAGGAGGAGCTAAAGTTAACACCTGGATTGATTCAATGAGAGCCTCCTCTCCACCCCGAGTCAAATCCACCATCCCTACTCCTGAAAACCGGGACATAAGTTCTTGGATTCTTCATCATCCTTCAGCGCTCGACGTGTTTGATCAGATAATACATAAGTCCAGAGGGAAAAAAATTGTAACCTTTCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGAGAAAGCATTCATGACTAAAAAGATGAGAGCAACGGTAAAGGACATAGCTAGACATTTTCCCACAGCCATCGTCAGCGGGAGATGCATAGATAAGGTATATAACTTTGTAAGACTGGCAGAGCTGTACTACGCAGGCAGCCATGGCATGGACATCAAGGGGCCAACGAAAACCCGAAGTTCTGAGAAAAGTAACCAAACAATCCTCTTCCAACCTGCGAGTCAATTCTTGCCCATGATCGACGAGGTGTACAAAATCTTGGTAGAAAAAACAAAGTCTGTCCCGGGGGCTACGGTAGAGAATAATAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAGAAGAGTTGGGGTGCGTTGGCTGAGCAAGTTAGATCAGTGCTCAACGATTACCCAAAACTTAGACTTACCCAAGGAAGGAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAAGCTCTCGAGTTTTTGCTACAGTCACTTGGATATGCAAATTCTAATGACGTATTTCCGATCTATATTGGTGATGATCGAACTGACGAGGATGCTTTCAAGGTTTTACGCAATAGAGGTCAAGGGATTGGGATTGTGGTTTCTAGAGTCCCAAAAGAAACAGAGGCTTCCTACACTCTGCAAGATCCATCAGAGGTCGAGCAGTTTTTGCGGCGTTTGGTGGAGTGGAAAAGAAAGAGTCGCTCCAACAAGTGTAGAGAGTTGTAA 1149 0.4526 MTNQNVMAPDVKSRINTVIAVLMSVSNSTMFPGAGVPESMALLHGFLGISQKKLMKRLNDGEGKGGAKVNTWIDSMRASSPPRVKSTIPTPENRDISSWILHHPSALDVFDQIIHKSRGKKIVTFLDYDGTLSPIVADPEKAFMTKKMRATVKDIARHFPTAIVSGRCIDKVYNFVRLAELYYAGSHGMDIKGPTKTRSSEKSNQTILFQPASQFLPMIDEVYKILVEKTKSVPGATVENNKFCLSVHFRCVDEKSWGALAEQVRSVLNDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLQSLGYANSNDVFPIYIGDDRTDEDAFKVLRNRGQGIGIVVSRVPKETEASYTLQDPSEVEQFLRRLVEWKRKSRSNKCREL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2405 382 CDD HAD_TPP 125 360 - -
Dere05g2405 382 Gene3D - 223 381 IPR023214 -
Dere05g2405 382 Gene3D - 122 207 IPR023214 -
Dere05g2405 382 SUPERFAMILY HAD-like 125 372 IPR036412 -
Dere05g2405 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 47 377 IPR044651 GO:0004805|GO:0005992
Dere05g2405 382 NCBIfam trehalose-phosphatase 119 368 IPR003337 GO:0003824|GO:0005992
Dere05g2405 382 FunFam Trehalose 6-phosphate phosphatase 218 377 - -
Dere05g2405 382 FunFam Trehalose 6-phosphate phosphatase 122 208 - -
Dere05g2405 382 Pfam Trehalose-phosphatase 125 358 IPR003337 GO:0003824|GO:0005992
Dere05g2405 382 NCBIfam HAD-IIB family hydrolase 125 332 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2405 Dere-ChrDere05 34464107 34465996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2405 125 367 Trehalose Biosynthesis Gene Families AT1G70290 27.203 2.29e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2405 05 34464107 34465996 Dere04g0923 04 9679597 9683924 CCT