Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2394 ATGTCGCACTTTGGAAGATCTGGTCCTCCTGACATCAGAGACACCTATTCCCTTCTAGTCCTCAATATCACTTTCCGTACAACCGCTGACGATCTCTACCCCCTTTTTGACAAGTACGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGCGAATCACGAGGTTTCGCGTTTGTTCGTTATAAGTATGCCGACGAGGCACAGAAGGCAGTGGATAAGCTTGATGGAAGAGTCGTTGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATTCACAAGGGCAGGATAGTGGAAGCATCCTCGAAGCCGAGAGGGAGGTCTAGAAGCCGCAGCCCTCGTCCTAGGCACAGGGATGAATATAGAGGCAGGGACTACAGGAGAAAAAGTCGCAGTAGAAGTAGGGAAAGATATGACCGTGACAAATACCGTGAAAGGGACAGGGATTATCGTCGCCGAAGTAGGAGCCGCAGTGCAAGTCCTGACCGGCACAAGGACCGTAGGAGAGGAAGAGATGACGAGGAGCGACGAACCAGAAGCCGATCATATGATAGTGCATCACCTCCGGCTCGGCATGGCCCCAGTCCTCATAGAAGTCCATCTCCACAAAGGAGGTCCTCTCGGGATGGACCACATGATGAACCGAATAGTCATGAGTTATCACCTGCTCAAAAGGATGTTTCACCACATGGCCGTCCTGTTGATTCTCGAAGCCCATCACGCAGATCTGATGCTGATGAATGA 771 0.5058 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIHKGRIVEASSKPRGRSRSRSPRPRHRDEYRGRDYRRKSRSRSRERYDRDKYRERDRDYRRRSRSRSASPDRHKDRRRGRDDEERRTRSRSYDSASPPARHGPSPHRSPSPQRRSSRDGPHDEPNSHELSPAQKDVSPHGRPVDSRSPSRRSDADE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2394 256 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 237 - -
Dere05g2394 256 MobiDBLite consensus disorder prediction 211 229 - -
Dere05g2394 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Dere05g2394 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dere05g2394 256 MobiDBLite consensus disorder prediction 122 191 - -
Dere05g2394 256 MobiDBLite consensus disorder prediction 239 256 - -
Dere05g2394 256 CDD RRM_SRSF2_SRSF8 18 90 - -
Dere05g2394 256 MobiDBLite consensus disorder prediction 102 256 - -
Dere05g2394 256 SMART rrm1_1 17 90 IPR000504 GO:0003723
Dere05g2394 256 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Dere05g2394 256 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Dere05g2394 256 Gene3D - 4 106 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2394 Dere-ChrDere05 34378512 34382799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2394 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.61e-10 57.4