Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2380 ATGCTCAACGAGACGTCTACTTTGTGTCTCTCAGCCATAGTTGATTCTCCACGACCTAAGCTTGGAATGTCTTTCGAACAAGCTATCAGAGAAGCAAAATTCTCTGGTCACATCCAAAGAAGTAATTATGAGGCCGAAGAACCCTCTCCAAATAGCTTCCAAAAGGGTCTTGCAGAGCTCGTGGGTCCATATGTTCTTATATTTGCGGGTTGTGGGGCAGGTCTGGTGAGTAAGGTGGAGCCGCTTACCATAGTTGGAGTAGCAATAGTAGCTGGTCTATCTTTGACGGTGGCTATATATTCAGTTGGTCATATCTCCGGTGCCCATTTCAATCCAGCAGTGACAATCGCTTTGGCTGCTGCTCGCAAATTTCCATTCAAACTTGTGCCCACTTATGTGTTGTGCCAGTTGATGGGCGCTACTCTGGCAAGCCTTACCGTCAGGGTGTTCTACAATGGGCAGGCAAGCATTCGGGTGGTAGTGACTCAGTACTCAAGTTCAACTAGTCATCTTGAGGCTATCGTATGGGAGTTCATAATCACCTTCATACCAATGTACACCATTTGTGGTGTTGCCACTGATGACAGAGGGAGCAAAGACCTCGCCGGAGTTGCCATAGGCACTGCAGTTCTATTTAATGTCATCATTGCCGGGTCTATTACTGGAGCTTCCCTGAATCCTGCAAGGAGTTTGGGCCCAGACATTGTCTCTGTTCATTTAGAACTCTGGTATCTGCTTCCCATGTCTCTACGAAATAGCAGATATGAAGTCCACAAATTGTATGGCGATTTTTTTCAAAGTATCAAGACAATGACTACGTATGTGCGTTGA 831 0.4609 MLNETSTLCLSAIVDSPRPKLGMSFEQAIREAKFSGHIQRSNYEAEEPSPNSFQKGLAELVGPYVLIFAGCGAGLVSKVEPLTIVGVAIVAGLSLTVAIYSVGHISGAHFNPAVTIALAAARKFPFKLVPTYVLCQLMGATLASLTVRVFYNGQASIRVVVTQYSSSTSHLEAIVWEFIITFIPMYTICGVATDDRGSKDLAGVAIGTAVLFNVIIAGSITGASLNPARSLGPDIVSVHLELWYLLPMSLRNSRYEVHKLYGDFFQSIKTMTTYVR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2380 276 PANTHER AQUAPORIN NIP2-1 41 243 IPR034294 -
Dere05g2380 276 Gene3D Glycerol uptake facilitator protein. 24 254 IPR023271 -
Dere05g2380 276 SUPERFAMILY Aquaporin-like 51 244 IPR023271 -
Dere05g2380 276 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Dere05g2380 276 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g2380 276 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g2380 276 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g2380 276 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g2380 276 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g2380 276 Pfam Major intrinsic protein 50 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2380 Dere-ChrDere05 34195616 34197748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2380 54 236 Major Intrinsic Protein MIP AT5G37820 49.189 5.02e-51 168