Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2350 ATGGCGAAGATACATAGGAAACTATTCCCAGCACTATCCAGTGTAAACCAAACCCAAGATTGTTCTGGTTTGTGTGACCCAGCTTGCCCTTACAACTGCTACTCTTTCCCTGACTACTACTTCCCACCGCCTCCACCTCCTCCACCTCCTATTTCGGCTACTGATCATTCAAGTTCAGGTACCCATATCCCTTCCTATTACATCATTCTTGCTTCTTTGTTCATTGTCATTTTTGTTCTTGTGGGTTTGTATGTGATCAAAGCCAAGTGCTATGCGACTTGGTGTGGCTGGAGACTCAATGAATCCCCACCAGACGCCTCTGACCAAGAGTTTCTTGATGAGAACCAAGTTGATCACCCTATCTGGTTCATCACCACCGTTGGGTTACAGCAGTCGATTATAAATTCTATCACAGTTTGTAGGTATAAAAGAGGTGACGGGTTGATCGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCGTGAAGATGAAACCTTAAGACTCTTGCCTAAGTGCAACCATGCCTTTCACATCCCCTGTATTGACACTTGGCTGCGTTCGCATACCAACTGTCCTCTCTGTCGTGCTGGGATTGTCTCTAACAATGTCGGTCCTGAAGCTGCCGTGTCAAATCTGGCTTCAATGGAGCTAAACCCTATCAATTCACGAAGGAATCAAGAGATTCAAACCGAGAATACGCCAAATGATGGTGAATTAAGCAACAATATGCAAGTAATTGCAAATGGGGCACCCGGAAACAGAGCCATAACAGGGGAAGCCCAAGACTTCACCGATGATTTGGTTTTAAAGGAGCACCGGAATGCTGTACGCAATGATCCAAAAGTGAATCATCAGGCTTTAAATGAAGAGATACGAATTGGGATAAGGTCTTTGTCTATGGATTCCAGACTGGCTGGTAGTTCTTGTTCTGATCCTGGTCTGGCAAATTTCTCTACTACAGAGCCTGGAGAAAGCCATGCAGTGTTAAGAGCAACTCGGGGTTCCTCTGTTGCAAAATGCCTGCACTTAAGCCCTGTTTCTATGAAGAGGTCATACTCTTGCAATGGAAGGATTCTATCTGCGAGAGGTCACAGAAATCTGCACATAAGCCTTCCCTAA 1122 0.4528 MAKIHRKLFPALSSVNQTQDCSGLCDPACPYNCYSFPDYYFPPPPPPPPPISATDHSSSGTHIPSYYIILASLFIVIFVLVGLYVIKAKCYATWCGWRLNESPPDASDQEFLDENQVDHPIWFITTVGLQQSIINSITVCRYKRGDGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVGPEAAVSNLASMELNPINSRRNQEIQTENTPNDGELSNNMQVIANGAPGNRAITGEAQDFTDDLVLKEHRNAVRNDPKVNHQALNEEIRIGIRSLSMDSRLAGSSCSDPGLANFSTTEPGESHAVLRATRGSSVAKCLHLSPVSMKRSYSCNGRILSARGHRNLHISLP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2350 373 SUPERFAMILY RING/U-box 148 201 - -
Dere05g2350 373 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 55 203 IPR044675 -
Dere05g2350 373 CDD RING-H2_EL5-like 153 196 - -
Dere05g2350 373 SMART ring_2 154 195 IPR001841 -
Dere05g2350 373 Pfam Ring finger domain 153 196 IPR001841 -
Dere05g2350 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Dere05g2350 373 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Dere05g2350 373 FunFam RING-H2 finger protein ATL54 129 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2350 Dere-ChrDere05 33828694 33829815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2350 3 200 C3H Transcription Factor Family AT1G72220 54.545 3.25e-67 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2350 05 33828694 33829815 Dere05g2350 05 33828694 33829815 ECH