Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2349 ATGGCACTAGAGACTGTTGTTTTCCCTCAAGATCCTTTCAACTATAGTTATAGTGCCAAGGATTTGTACTCCTTATTGGGAGTTGGTTATGGATTAGAAGCAGAACAAGAGAAAGGCTTCGTTGGAATTACAAGCAATATGATAGAGCAGAGTGTGCATGCAAATTGGGACTATTCTAGTTCATCTCCTTCGGTGTTGCAATATGCGAAGGAGGCATGGGATTATTCTAACTCTTCGCCTGAGATTGATCAATCTCTGTCGGGAACCCCCCCTGCAGCTTCCACAGGACGCCGCAAACGACGTCGCACCAAGATCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTAGAGCGCAATCGCCGTAAACAGATGAATCAGTACCTGGCCGTGCTCCGATCCTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCCTCTGTAATTGGGGGCGCCATTAATTTCGTGAAGGAGCTGGAACAGCTTCTACAGTCGATGCAGGGTCAGAAGAAAACAAAGCCACACTCACAGGACAGTGGCTTTGCTGAGTTCTTCACGTTCCCACAGTACACGACACGCGAAACTCAGAGCAACACGAGTTGTACGGCCACGAACGACGTCAAGGAGTCGGGGGTAGCAGACATAGAAGTGAGCTTGGTGGACAGCCACGCCAACCTCAAAATACTGTCCAAGAAACGACCCGGCCAGCTTGTGAAGATGGTAGTTGGGCTTCAGACTCTCAGACTCTGCATTCTTCACCTCAATGTTACCACCACTCTCGATGATATGGTTCTTTACTCCGTCAGTGTAAAGGTTGAGGAAGGGAGTCAGTTGAACACAGTAGATGAAATTGCAGCTGCTGTGAATCAACTATTGCTCAGAATTCAACAAGAAGCTGCTTTCAGTTGA 927 0.48 MALETVVFPQDPFNYSYSAKDLYSLLGVGYGLEAEQEKGFVGITSNMIEQSVHANWDYSSSSPSVLQYAKEAWDYSNSSPEIDQSLSGTPPAASTGRRKRRRTKIAKNKEEIENQRMTHIAVERNRRKQMNQYLAVLRSLMPPSYVQRGDQASVIGGAINFVKELEQLLQSMQGQKKTKPHSQDSGFAEFFTFPQYTTRETQSNTSCTATNDVKESGVADIEVSLVDSHANLKILSKKRPGQLVKMVVGLQTLRLCILHLNVTTTLDDMVLYSVSVKVEEGSQLNTVDEIAAAVNQLLLRIQQEAAFS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2349 308 SMART finulus 120 171 IPR011598 GO:0046983
Dere05g2349 308 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Dere05g2349 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 184 IPR036638 GO:0046983
Dere05g2349 308 PANTHER MAX DIMERIZATION, MAD 64 305 - -
Dere05g2349 308 MobiDBLite consensus disorder prediction 79 103 - -
Dere05g2349 308 CDD bHLH_AtFAMA_like 117 179 - -
Dere05g2349 308 Gene3D - 104 180 IPR036638 GO:0046983
Dere05g2349 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2349 Dere-ChrDere05 33816200 33817332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2349 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.265 6.05e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g2349 HLH 2.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2349 05 33816200 33817332 Dere04g0868 04 8943892 8945028 CCT
Dere05g2349 05 33816200 33817332 Dere05g2349 05 33816200 33817332 ECH