Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2347 ATGAGGTTCTCTTCCCGGGAGACTCGTGCTCCTTCCTCTCTCCCTCTCTGCAATTCTGACCATGGCCTTCATCTCTTTCTTCTTCTTCGCCTCCTCCTTCTCCTCCACGCCTGTTCCCCAGCTTCCGCACAGCTCCCAATTCCCCCTCCCCCTTCCCGGTCTGAGCCAGTCTACGAAGTCCGATTCGATAAATCCATGGCCATCATCTTGGTCATCCTCGTTGTCGTCTTCTTCGCCCTAGGCTTCGTCTCTGTCTACTCTCGTCAATGTGCAGAGCGACGATTCAGAGGAACCAACCACCTCGGTCTCCCCACCGGGAATAGCGACCACCACCTCCGAGGCCTCGACCCCGAAATCATCCGCACCTTTCCCACTTTCCTCTACTCCACCGTCAAGGGCCTTAAACTTGGGACAAGCGCCCTGGAATGCGCCGTCTGCTTAAACGAGTTTCAAGACCACGAAACTCTGCGCTTCCTTCCCAAATGCAGTCACGTTTTTCATCCCCATTGCATCGACCTCTGGTTGTCCTCTCACTCTACCTGCCCTGTTTGTCGGGCAAACCTCGCTCCCACGCCCGGTGACATCTCCTTCGTCGCCGTTCAGATACCCGACTCCGCTATTGAACCGGACCCAAGACCCGAATCTGAAGATCGACACGACAGGGATATCATCCAACTTGATCAAGACAACAGCAACAGAGTAGCAGATTCCTCCCCCAAGAACATGGATGTCATCAATTTGATCGACCGGAATCAGAACCCTCCACCGAGGTCAAGGTCAACGGGGTTCCGGATTGCGAGCTTGTTTCCGCGATCTCACTCGACGGGACACTCACTGATTTCGCAGCGCGTGAATAGTGAGAGATTCACTCTGAGATTGCCGGAGGAGGTGAGGAAGGAGCTTCTGAACCCGACGCTGAAAAGTTCCGTGACTTTCACGAGAATGGGAAGCGAAAGAAGGGGTTACAGGACGCGAAGCGTGGGAAGCGGAGGTGGGGGCAGCTATTTGCAGCACCAACGGTCGGACCGGTGGGGGTTCACGTGGACGCCGCCGTTTATCAATCGGAGCGGTTCGAGCTCGTCGAGGAAGCCACATCCGAATAGTTCAGAGGTGGCAATGGACAACTTGGAAGAACGATCTACGGATCGGTTATGTCCACAACCTGAGGATTAG 1173 0.5507 MRFSSRETRAPSSLPLCNSDHGLHLFLLLRLLLLLHACSPASAQLPIPPPPSRSEPVYEVRFDKSMAIILVILVVVFFALGFVSVYSRQCAERRFRGTNHLGLPTGNSDHHLRGLDPEIIRTFPTFLYSTVKGLKLGTSALECAVCLNEFQDHETLRFLPKCSHVFHPHCIDLWLSSHSTCPVCRANLAPTPGDISFVAVQIPDSAIEPDPRPESEDRHDRDIIQLDQDNSNRVADSSPKNMDVINLIDRNQNPPPRSRSTGFRIASLFPRSHSTGHSLISQRVNSERFTLRLPEEVRKELLNPTLKSSVTFTRMGSERRGYRTRSVGSGGGGSYLQHQRSDRWGFTWTPPFINRSGSSSSRKPHPNSSEVAMDNLEERSTDRLCPQPED 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2347 390 MobiDBLite consensus disorder prediction 204 224 - -
Dere05g2347 390 Pfam Ring finger domain 142 185 IPR001841 -
Dere05g2347 390 SUPERFAMILY RING/U-box 137 192 - -
Dere05g2347 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 191 IPR013083 -
Dere05g2347 390 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Dere05g2347 390 FunFam E3 ubiquitin-protein ligase ATL6 105 191 - -
Dere05g2347 390 CDD RING-H2_EL5-like 142 185 - -
Dere05g2347 390 MobiDBLite consensus disorder prediction 317 336 - -
Dere05g2347 390 PANTHER RING FINGER DOMAIN-CONTAINING 48 188 - -
Dere05g2347 390 MobiDBLite consensus disorder prediction 375 390 - -
Dere05g2347 390 SMART ring_2 143 184 IPR001841 -
Dere05g2347 390 MobiDBLite consensus disorder prediction 209 224 - -
Dere05g2347 390 MobiDBLite consensus disorder prediction 354 390 - -
Dere05g2347 390 MobiDBLite consensus disorder prediction 354 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2347 Dere-ChrDere05 33791099 33792271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2347 18 356 Rapid Response to Elicitors AT3G05200 38.701 7.56e-61 200
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2347 05 33791099 33792271 Dere04g1290 04 14660978 14662009 CCT
Dere05g2347 05 33791099 33792271 Dere05g2347 05 33791099 33792271 ECH