LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g2337	ATGAGGAAGAAAAGAAAAGGAAGTGAGACGGATGCATCCTCAAATTTGCCCGAAATTTTGACTTCACATCACGGGAATCATGGGTCTCCATCATCAAATTTGAAATCTCATTACTCGCTAGAAGATTGTTCCAGGCTGAAGAAGAGGTGTAAAGAAGATGCTGAATCAGAAGTGGTTGCTTCCTGTAATAATAGGCTTGCAGGCTTTGCCACTGCTCCACCTTGTGGGACATCATCTTTGATCACTCCTGGAAGAGGTCTTAAGAGGAAGATAGGATGCATTGATGGTGCTACCCAGATGGGCAGGAAGAAAAAGATTGAGGATGTTTATGTTTTTGGTGAAACAATTGGTCAAGGCAAATTTGGATCTGTTTCATTGTGTCAGTCCAGGCTCAGTGGAGCAGAATATGCATGTAAGACTCTGAGGAAGGGGGAGGAAACGGTTCATCGAGAAGTGGAGATAATGCAACACTTATCTGGACATCCTGGGGTTGTGACGCTGCAGGCAGTGTATGAAGAAGCTGAATGCTTTCATCTTGTTATGGAGTTGTGCTCTGGGGGGCGATTGATTGATAGGATGGTTAAGGAGGGCCCATATACAGAGCAGAGGGCTGCTAATGTACTCAAAGAAGTGATGTTAGTCATTAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTAACGACATCAGGAAAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAATGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCCCCAGAGGTATTGTTGGGTAGCTATTCTGAAAAGGTGGATGTTTGGAGTGCTGGAGTTCTATTGCATGCTCTATTAGTTGGTGTTCTTCCATTTCAAGGAGATTCACTGGAAGCTGTCTTTGAGGCTATTAAGAATGACAAACTGGACTTCCAGAAAGGGATGTGGGACCTGATATCTAGGCCTGCACGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTTTAGCAAGGATAACGGCTGATGAAGTACTTAGGCATCCCTGGATATTGTTCTACACAGAGCCTACATTAAAAGCACTGCCCATCAAAACAAAATTGAAGCACCAAATTGGAGCCAGTTGCCGCCAGTTCGTTGCACCTGAACCAGGGTTCGGAGGAAACAAGATAGACGATGGATTTAGTGAAGTTTCAAGCTCGCTTTCATTCTCCGAGAGTTGCAATTCAGAAGATCAGGATGATTGTGTGCTGATTGATGTGCTCGCCTCTGCAATTTCACATGTGAGGATATCCGAACCCAAGAGAAGCAGGTTATGTGGTCCGACAGGTCCAATAGATCAGCAGGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA	1413	0.4437	MRKKRKGSETDASSNLPEILTSHHGNHGSPSSNLKSHYSLEDCSRLKKRCKEDAESEVVASCNNRLAGFATAPPCGTSSLITPGRGLKRKIGCIDGATQMGRKKKIEDVYVFGETIGQGKFGSVSLCQSRLSGAEYACKTLRKGEETVHREVEIMQHLSGHPGVVTLQAVYEEAECFHLVMELCSGGRLIDRMVKEGPYTEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTTSGKIKLADFGLAMRISNGQNLTGLAGSPAYVAPEVLLGSYSEKVDVWSAGVLLHALLVGVLPFQGDSLEAVFEAIKNDKLDFQKGMWDLISRPARDLVGRMLTRDVLARITADEVLRHPWILFYTEPTLKALPIKTKLKHQIGASCRQFVAPEPGFGGNKIDDGFSEVSSSLSFSESCNSEDQDDCVLIDVLASAISHVRISEPKRSRLCGPTGPIDQQGSSNMKANNLCKAF	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g2337	470	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	223	235	IPR008271	GO:0004672\|GO:0006468
	Dere05g2337	470	ProSiteProfiles	Protein kinase domain profile.	110	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2337	470	SUPERFAMILY	Protein kinase-like (PK-like)	103	376	IPR011009	-
	Dere05g2337	470	CDD	STKc_CAMK	109	357	-	-
	Dere05g2337	470	ProSitePatterns	Protein kinases ATP-binding region signature.	116	139	IPR017441	GO:0005524
	Dere05g2337	470	FunFam	Serine/threonine-protein kinase PEPKR2	101	425	-	-
	Dere05g2337	470	Pfam	Protein kinase domain	110	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2337	470	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dere05g2337	470	MobiDBLite	consensus disorder prediction	12	34	-	-
	Dere05g2337	470	PANTHER	SERINE/THREONINE-PROTEIN KINASE	98	372	-	-
	Dere05g2337	470	SMART	serkin_6	110	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g2337	470	Gene3D	Transferase(Phosphotransferase) domain 1	101	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g2337	Dere-ChrDere05	33711905	33714274	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g2337	106	358	EF-hand Containing Proteins	AT4G35310	45.247	3.80e-79	254

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Dere05g2337		Pkinase	1.9e-67	CL0016