Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2329 ATGAACCGTGGCGTAGCGTCACCGTACCATAGATCTTCTCCAATCGGAAGCAGAAAGCGGATTCCTAGTGACCAGAAACATTTTGAAAGGAAATTAAGGAAAGAGGAGGCAGATATGGAATTTGAGGACCACGAAGAGCAAGAGGACGACATGGAGATCCCGGTGTCGCCGCCCGGATACGACTCCCTCGGCAACAACTCGGGGACTAGGTCCAAAATGGGTGTCTCAGTCGTTGGAGGCGATGGCGGCGCCTCCACCCTGACAGCTGGCAGGAAAGTTGAGCCCGCAGTAACGGCCAGGTACAGAGAATGCCAAAAGAACCACGCCGTCAGCCTCGGCGCCCACGCAGTCGACGGCTGCGGCGAGTTCATCGCGGCGGGAGCGGAAGGAACACTCGACGCGCTAAAATGCGCCGCTTGTAACTGTCACCGCAATTTCCACCGTAAGGAGACGGACGGTGGGGAAATGACCCCGTACCAGCCGCCGCCGCCGCACCACCTGTACCACCAGCAGTTTCCACCATACTATTGTACGCCGCCGCCGCCAGCTGGGTACCTCCATCACCATCTGGCGGCTCAGCCGATGGCGCAACAGCGGCCGTTGGCTCTGCCGGCTGCGGCGTTGAGTAGGGATGAGGAGGACATGTCGAATCCGAGTAGCAGCGGAGGCGGAGGAAGCGGTGGTGGTGGGGGAGGGAAGAAAAGGTATAGGACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCTGGCATTTGCGGAGCGGGTAGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGTTGGAGCAATTCTGTGAGGAGACTTGTGTCAAAAGACATGTGCTCAAGGTTTGGATGCACAATAACAAGCATACTCTTGAAAGAAGCAGTTCAAATTTTGCTTCGTGTTCATTGAAATCTGTCATGCTTAACTGCATTTCCGCTTTCTCACGGCCTCAGCTTTACTCATCTCTTATTCACGAATATCTGAATTACAATTATCTGGGTATTCTGGGTGCAATCGGAAGTGAAAACACCGAACCGTTTGAAGAGATTTATGATCCAAGTGTGACACCATTTTTTGCTCCTTCTGGCATCATTTTCGCCTGTTCATATGTAGTAGTACTTGTTGAAGAAGAGATACCTCGTCCCCCATTGATTGTTCATTACACTTTCAGTTAA 1179 0.5284 MNRGVASPYHRSSPIGSRKRIPSDQKHFERKLRKEEADMEFEDHEEQEDDMEIPVSPPGYDSLGNNSGTRSKMGVSVVGGDGGASTLTAGRKVEPAVTARYRECQKNHAVSLGAHAVDGCGEFIAAGAEGTLDALKCAACNCHRNFHRKETDGGEMTPYQPPPPHHLYHQQFPPYYCTPPPPAGYLHHHLAAQPMAQQRPLALPAAALSRDEEDMSNPSSSGGGGSGGGGGGKKRYRTKFTQEQKEKMLAFAERVGWRIQKHDEAALEQFCEETCVKRHVLKVWMHNNKHTLERSSSNFASCSLKSVMLNCISAFSRPQLYSSLIHEYLNYNYLGILGAIGSENTEPFEEIYDPSVTPFFAPSGIIFACSYVVVLVEEEIPRPPLIVHYTFS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2329 392 NCBIfam homeobox domain, ZF-HD class 233 289 IPR006455 -
Dere05g2329 392 Gene3D - 218 296 - -
Dere05g2329 392 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 101 150 IPR006456 -
Dere05g2329 392 SUPERFAMILY Homeodomain-like 219 294 IPR009057 -
Dere05g2329 392 Pfam ZF-HD protein dimerisation region 99 151 IPR006456 -
Dere05g2329 392 FunFam Zinc-finger homeodomain protein 2 225 294 - -
Dere05g2329 392 MobiDBLite consensus disorder prediction 20 40 - -
Dere05g2329 392 MobiDBLite consensus disorder prediction 209 235 - -
Dere05g2329 392 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 100 150 IPR006456 -
Dere05g2329 392 MobiDBLite consensus disorder prediction 1 55 - -
Dere05g2329 392 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 86 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2329 Dere-ChrDere05 33646085 33648648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2329 39 293 ZF-HD Transcription Factor Family AT4G24660 51.527 7.67e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere05g2329 ZF-HD_dimer 2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2329 05 33646085 33648648 Dere04g0855 04 8762842 8763651 CCT
Dere05g2329 05 33646085 33648648 Dere05g2329 05 33646085 33648648 ECH