Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2296 ATGCTTCCTTTTAGGAGTTTCTATGGCTTTGAAAGCTGGTTAGATCACAGTGGGTATTCTCAGGAACCGAGCTCGATGACCAAGTCCATGAAATTGGACGGTGGCAAAACAATTCTGACCTCCACATCAAAGGCTGAGAGGAAATCAACGGAAGCATGCAGGAGCCACAGGGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCCCACCTCTCCACTCTCCGCTCTCTCCTCCCTAACGCCGCAAAGTCGGACAAGGCCTCGTTGCTAGCGGAGGTGGTCCAGCAGGTGAAAGACCTGAGGAAACAAGCCGATGACGTGGGGCGCTATCACGACGGAGACTTATCATGCAGCACTATCAGCGGCGAATCCGGGTCGGATCCTGGCGACTCGGAGCAGTGGGCGTTCCCGGGCGAGTCAGACGAGGCAACTTTGAGTTATTGCGACGGAGCTGGGGAGAGGAAGCTAATGAAAGCCACGCTGTGCTGCGAAGACCGGCCGAACCTAAACCGGGATCTAGCGGAGGCTATCCGGTCGGTTCGGGTTAAGGCGGTTCGGGCAGAGATGATGACCATTGGTGGGCGAACCAAGAGTGTGGTGTTAATGTACTGGCCTGGTGGGGAAGAGAAGGAGGAGGAGGTTCGAGCACTGGAACGGGCATTGACGGCTGTTGTAGAGAATCGGGCCTTGGTAGGATCAGGGCTGGGCCGAATGGAGTTGGGCCACAAGCGGGCCCGTCATTGCTATGGTATCCCCAATGAGGGCGAAAGTGGCTTCTTGCTGAGGACTGCTAACATTTGCAACAGACGGGAAGAGATGGTGTGGCCAATTCGTGAGTACCACTCCACTCTTGGTCCCAAACCTGTTCACTTGTCCGATCAACGGTTGCGCTTGTGGGTTCGTCTGTCCATGGAGACTCCTCTTGGTGCTTCCCCTTTTCTACTCCAACCAGCTTCCCTCTGGGCGAAATGGGCAAAATCTGAAGCAGCATTCTCGTCTTCAGTTAAGGAGAAACAACTAGAGGTTCCAAGTAATTGCCTCAGACTCAGTCAAGAGTACAAAGGCCTAAACATGGGAACCACAGTTGAAACTGATAGTAGCCAGGACTTATTTGGTTTGATGAAACAGAGATTTCTGAGTTTCAAGAAGCAGAAATATATGAAAGAGTTGGAGCATTTTCAAGCTCTTGCTGAAGCTCAATCTCCAAAGTTTATGGTAATTGCTTGTGCAGACTCGAGAGTATGCCCCTCTAACATACTAGGATTTCAACCTGGAGAGGCCTTCATGATCCGTAACATCGCCAATCTTATTCCTCCTATGAAGAATGGACCAACTGAGTGTAATGCTGCACTTGAGTTTGCTGTAACTATCCTCAAGGTTGAAAATATTCTAGTTATTGGTCACAGCAGCTGCGCTGGGATTGAAACGTTGATGAATATACAAGAAGATGCAGAATCCAGAAGCTTCATCAACCAATGGGTTGTTAATGGGAAAGTTGCCAAGTCAAGGACAAAAGCTGCTACAGCTCATCTTAGTTTTGGTCCGCAATGCAGATTCTGTGAGAAGGAGTCTATAAACCAATCGCTATTGAACTTGCTCAGTTACCCTTGGATAGAAGATAAAGTGAAGAAAGAGTTGCTTTCTCTTCATGGAGGATACTATGATTTTTCAAATTGCTCGTTTGAGAAGTGGACCCTTGATTTTAGAAGACGCAATATTCAAGAAGAACAAGGCAGTTATAGTGTCAAAGAACAAGAAATTTGGTATTGA 1770 0.4876 MLPFRSFYGFESWLDHSGYSQEPSSMTKSMKLDGGKTILTSTSKAERKSTEACRSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLAEVVQQVKDLRKQADDVGRYHDGDLSCSTISGESGSDPGDSEQWAFPGESDEATLSYCDGAGERKLMKATLCCEDRPNLNRDLAEAIRSVRVKAVRAEMMTIGGRTKSVVLMYWPGGEEKEEEVRALERALTAVVENRALVGSGLGRMELGHKRARHCYGIPNEGESGFLLRTANICNRREEMVWPIREYHSTLGPKPVHLSDQRLRLWVRLSMETPLGASPFLLQPASLWAKWAKSEAAFSSSVKEKQLEVPSNCLRLSQEYKGLNMGTTVETDSSQDLFGLMKQRFLSFKKQKYMKELEHFQALAEAQSPKFMVIACADSRVCPSNILGFQPGEAFMIRNIANLIPPMKNGPTECNAALEFAVTILKVENILVIGHSSCAGIETLMNIQEDAESRSFINQWVVNGKVAKSRTKAATAHLSFGPQCRFCEKESINQSLLNLLSYPWIEDKVKKELLSLHGGYYDFSNCSFEKWTLDFRRRNIQEEQGSYSVKEQEIWY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2296 589 MobiDBLite consensus disorder prediction 41 64 - -
Dere05g2296 589 Gene3D - 45 110 IPR036638 GO:0046983
Dere05g2296 589 PANTHER CARBONIC ANHYDRASE 346 570 IPR001765 GO:0004089|GO:0008270
Dere05g2296 589 SMART finulus 57 106 IPR011598 GO:0046983
Dere05g2296 589 Pfam Helix-loop-helix DNA-binding domain 53 100 IPR011598 GO:0046983
Dere05g2296 589 Coils Coil 207 227 - -
Dere05g2296 589 MobiDBLite consensus disorder prediction 47 64 - -
Dere05g2296 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Dere05g2296 589 Pfam Carbonic anhydrase 405 558 IPR001765 GO:0004089|GO:0008270
Dere05g2296 589 SMART Pro_CA_2 397 565 IPR001765 GO:0004089|GO:0008270
Dere05g2296 589 SUPERFAMILY beta-carbonic anhydrase, cab 366 571 IPR036874 GO:0004089|GO:0008270
Dere05g2296 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 109 IPR036638 GO:0046983
Dere05g2296 589 Gene3D Carbonic anhydrase 361 573 IPR036874 GO:0004089|GO:0008270
Dere05g2296 589 CDD beta_CA_cladeB 377 564 IPR045066 GO:0004089|GO:0008270
Dere05g2296 589 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 409 416 IPR015892 GO:0004089|GO:0008270|GO:0015976
Dere05g2296 589 FunFam Carbonic anhydrase 366 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2296 Dere-ChrDere05 33331313 33335274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2296 43 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 39.247 1.93e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g2296 Pro_CA 2.2e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2296 05 33331313 33335274 Dere05g2296 05 33331313 33335274 ECH