Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2295 ATGGGTGGTGCAGCTTCTTTCGAGGCATTCCCCAGAATTTTCTTCTTCTTCTTCTTCCTCATCCTCCATACCATCATACTCATCGCACAGGCTGCCGGTGGTGCCACCGCAAAAACCCCACCTTCTCCTCTAACTTTGACTCTTCATGACACCGGCACAGGAAAATCACCTCCGTCGCCGCCATCGGAAAATCCCGATGTCGGAGGAGGACATGGGTCTCCGTTTAAGCCTAGCGTGATCGTTGTAGTGGGGGTATTGACCACCCTGTTTTCTGTTACCTTTCTCCTCCTTCTCTATGTTAAACACTGTAAGCCCGGGAATGAGTCCATGAATTCACACAGAGGCCCAGTTTCTGTGGTGAGAAAGAACTCCGGCATTGACCGGACGGTGATTGAGTCCTTACCCATTTTCAGATTCGGATCGCTGAGGGGTCAAAAAGATGGTCTCGAATGCGCGGTCTGCCTGACCCAGTTTGAGTCCGTGGAGGTTCTTCGGTTGCTTCCGAAATGCAAGCACGCCTTCCATGTCGAATGCGTAGATACGTGGCTGGACGCACATTCTACCTGCCCGCTTTGTCGGTTCCGAGTCGACCCGGAAGACATTCTCCTGGTGGAGGAGGCTAAGGTTTGGCCGCATAATCAGCCCATTCCACCACTACAAGAGAACTCTGTCAATCCGGAGAATTTGGACATAGAGAGCGGTCAGGAACCGGATTCACAGAATCGGGTCGTATCAAACTCGATCCTCCGACGAGTCTCCGGGAGGCATTCATCGGTAGGGGAAAGAGGAGGAGGAGGAGGTGGTGGCAGTGGTGGGTTCTTACAGATTATATTGCAGCAGAGAACGAGCGTGGAGGTCGAACCGACGACGCAGCAGAAGAAAATGCCGCCGTATAGAAGGTCCCTAGACAGTGCAATGTCCACAAAGAGAAAGCGAAACGAGGGAGGGAGAGAAAGAGAAGGTGGTGGTGGGTGTGATGGTCCCAGAAAAGATGGGCTATTGTTAACGGAAAAGGAAAAGAAGCACAGGTTGGAGCACAGGATCATAGTGTCTCCGTCCCAAAAACCCACAGTATTCCATCAAAGATGGAGCGACGTACAACCGTCGGATCTACTCTATCTGACGTCGGAGATGATCATGAGCGAGGACGCCCACAGATTGTCGTCTTCCTCGTCTGGACCGTCGCTTTCGCGGCGGCAGCAGCAGCAGCAGCAACAGAATATACAGCTGCCGCTGTACCGGAACACAGCAGAGAACCCGAACCGTATAGGAGAGAACCGCAGTGGGGCAACCAATATTAGAAGCGTGTCGGAAATCACGGGATTGAGCAGAAAGAGAAGAGGGGAAGGTCACCATCATCGGGAAGAAGAAGAAGAGAGACAGGCGGGAGTAGTATCCAGATGGTTGGCTTGGATCTCTCAGCCTCAAGGATCCGTACGGTAG 1443 0.526 MGGAASFEAFPRIFFFFFFLILHTIILIAQAAGGATAKTPPSPLTLTLHDTGTGKSPPSPPSENPDVGGGHGSPFKPSVIVVVGVLTTLFSVTFLLLLYVKHCKPGNESMNSHRGPVSVVRKNSGIDRTVIESLPIFRFGSLRGQKDGLECAVCLTQFESVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRFRVDPEDILLVEEAKVWPHNQPIPPLQENSVNPENLDIESGQEPDSQNRVVSNSILRRVSGRHSSVGERGGGGGGGSGGFLQIILQQRTSVEVEPTTQQKKMPPYRRSLDSAMSTKRKRNEGGREREGGGGCDGPRKDGLLLTEKEKKHRLEHRIIVSPSQKPTVFHQRWSDVQPSDLLYLTSEMIMSEDAHRLSSSSSGPSLSRRQQQQQQQNIQLPLYRNTAENPNRIGENRSGATNIRSVSEITGLSRKRRGEGHHHREEEEERQAGVVSRWLAWISQPQGSVR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2295 480 FunFam RING-H2 finger protein ATL43 126 200 - -
Dere05g2295 480 MobiDBLite consensus disorder prediction 275 297 - -
Dere05g2295 480 MobiDBLite consensus disorder prediction 440 462 - -
Dere05g2295 480 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Dere05g2295 480 MobiDBLite consensus disorder prediction 384 462 - -
Dere05g2295 480 SMART ring_2 151 192 IPR001841 -
Dere05g2295 480 MobiDBLite consensus disorder prediction 40 70 - -
Dere05g2295 480 SUPERFAMILY RING/U-box 130 198 - -
Dere05g2295 480 MobiDBLite consensus disorder prediction 252 332 - -
Dere05g2295 480 MobiDBLite consensus disorder prediction 304 332 - -
Dere05g2295 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Dere05g2295 480 MobiDBLite consensus disorder prediction 40 57 - -
Dere05g2295 480 MobiDBLite consensus disorder prediction 384 439 - -
Dere05g2295 480 Pfam Ring finger domain 150 193 IPR001841 -
Dere05g2295 480 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 60 472 - -
Dere05g2295 480 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2295 Dere-ChrDere05 33319150 33320592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2295 73 478 C3H Transcription Factor Family AT5G05810 43.488 2.95e-85 266