Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2293 ATGGGCAATTGGAGAGAGAGATATATTATATGTAAGATGGCGAAGGAGAAGATCAAGATCAAGAAAATTGACAACGTGACAGCGAGGCAGGTCACTTTCTCTAAAAGAAGACGAGGGCTCTTCAAGAAAGCCTCAGAGCTTTCGGTTCTATGTGATGCTGATGTTGGTATCATTATTTTTTCTGCTACCAGCAAGCTCTTTGAATACTCCAACTCCAGTATGAAGGACATTATTACAAGGTATAACCTACACTCATGTGAAGCCAACAAACTTACGGACAAACCTTCTCTAGAAATGCAGCTAGAGAACAGAAATTGCACCAAATTGAACAAGGAAGTGGCTGAAAAAACGAACCACCTAAGGCACATGAAAGGTGAAGATCTTCAAGGACTAAACCTTGAAGAGTTGCAACAATTGCAGAAAGTGCTTGAAACAGGACTCAGCCGCGTAATTGAAACAAAGGAAAATCGGATTATGAGTGAGATTACTGCACTTCAGATAAAGGGAATGGAGTTGGTAGAAGAGAACAAGCAGCTGAAGCACAAGCTGTGTAGAGGAAAAATAGCACTGCCGATTGTGGAGTCATCAGACATTGGAATACAGGAAGAAGGAGTGTCCTCAGACTCTATCACTAACGTCTACAGCTGCAACAGTGGCCCTCCTCTTGACGATGACTCTTCTGACACTTCTCTCAAGTTAGGGTTACCCAATTCGAATTAA 720 0.4208 MGNWRERYIICKMAKEKIKIKKIDNVTARQVTFSKRRRGLFKKASELSVLCDADVGIIIFSATSKLFEYSNSSMKDIITRYNLHSCEANKLTDKPSLEMQLENRNCTKLNKEVAEKTNHLRHMKGEDLQGLNLEELQQLQKVLETGLSRVIETKENRIMSEITALQIKGMELVEENKQLKHKLCRGKIALPIVESSDIGIQEEGVSSDSITNVYSCNSGPPLDDDSSDTSLKLGLPNSN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2293 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 Gene3D - 25 95 IPR036879 GO:0003677|GO:0046983
Dere05g2293 239 MobiDBLite consensus disorder prediction 217 239 - -
Dere05g2293 239 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Dere05g2293 239 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 ProSiteProfiles K-box domain profile. 99 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere05g2293 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 177 - -
Dere05g2293 239 CDD MADS_MEF2_like 24 85 IPR033896 GO:0000977|GO:0045944
Dere05g2293 239 Pfam K-box region 100 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere05g2293 239 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Dere05g2293 239 FunFam Transcription factor, MADS-box 25 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2293 Dere-ChrDere05 33271343 33278694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2293 13 236 MADS-box Gene Family AT2G22540 57.741 4.23e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere05g2293 K-box 3.6e-16 No_clan