Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2284 ATGATCTTGATCGAAGCCCATAAGGAACTAGGGAACAGGTGGGTAAAAATCGCACGTAGGCTTCCTGGAAGAACTGAGAACAACATCAAGAACCATTGGAATGTCGCAAAGCGTCACCAAAAAGCCAAGAAACAAAGGAAGAAGGGATCCTCAACCAGGTCTTCACTTCTTCAAAACTACATCAAGCAGGTCACTTCGGCCCAAGCAGCCGTGAAGCAGTGGGAGATCAAGGATGTGGCTACAGAAATGAACAAACTGGTGCACGATGAGGACATGGTAAGGGATATAGATTTGTTCGAGATGATTTATGGAATTGGAAAGCGTTGA 327 0.4526 MILIEAHKELGNRWVKIARRLPGRTENNIKNHWNVAKRHQKAKKQRKKGSSTRSSLLQNYIKQVTSAQAAVKQWEIKDVATEMNKLVHDEDMVRDIDLFEMIYGIGKR 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2284 108 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Dere05g2284 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Dere05g2284 108 Coils Coil 57 77 - -
Dere05g2284 108 CDD SANT 2 34 IPR001005 -
Dere05g2284 108 PANTHER MYB PROTEIN-RELATED 2 55 - -
Dere05g2284 108 MobiDBLite consensus disorder prediction 36 55 - -
Dere05g2284 108 Pfam Myb-like DNA-binding domain 2 35 IPR001005 -
Dere05g2284 108 SMART sant 1 39 IPR001005 -
Dere05g2284 108 MobiDBLite consensus disorder prediction 36 50 - -
Dere05g2284 108 SUPERFAMILY Homeodomain-like 2 42 IPR009057 -
Dere05g2284 108 Gene3D - 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2284 Dere-ChrDere05 33179152 33179646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2284 2 64 MYB Transcription Factor Family AT4G18770 58.730 4.34e-19 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere05g2284 Myb_DNA-binding 4.7e-12 CL0123