Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2269 ATGCTCGGAACAACAATGTACGGACAAGCCCCGACTATGAACGTAGCCTCGCAGATCGCCGCCGGTGAAGATGAAGATGGCTCTTGCGCCGGTGCAGAATCCATTGATAACCACCACATTCATTACGAAACACCCGCTCTCGAAGATGGTGGTGGCGGAGTTGGTGGCGTCATGGAGGATGTTACATCCGATTCTCTATATGTCTCTGGTAGTGGAGGTCCTGAAATGTCGGTGCAACGGTCTGATGATTCCAGCCAACTTACCCTCTCGTTTCGTGGCCAAGTATATGTGTTCGACTCTATTACTCCTGATAAGGTTCAAGCGGTATTATTACTTTTGGGTGGATGTGAACTATCGTCAGGTTCGCAGTGTGTGGAGATAGCGCCTCAAAATCAGCGGGGTGCAATGGAATATCCCGGAAGATGTAGTCAGCCACAGCGAGCAGCCTCATTAAGTAGGTTCCGTCAGAAGAGGAAGGAGCGATGTTTTGATAAAAAAGTTAGATATAGTGTACGCCAAGAAGTTGCCCTTAGGATGCACCGTAATAAGGGTCAATTCACTTCTTCTAAGAAACAAGATGGGTCTAATAGTTGGGGTACAGTCCAGGAGTCGGGGCAGGATGACAGTCAGTCAGAAACATTATGTACGCATTGTGGCATAAGTTCAAAATTCACCCCAATGATGCGGCGAGGACCATCTGGTCCAAGATCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGACCTTTCCAAGAGGAACCAAGAACATTCTCTTGCTCATGCTGAGCAGGTAATGAGTGCATCCTCTTTACCCCATGTTGCACTTGATGACCAGGTTGATGAAGGTAATGAATCAGACAGTCGGACTGCCATTCCTGCACATAACAATCTTGTCACTTTCTCTGATAATGAAAACCCTGCATTGATATCTGATCGTTGA 957 0.4713 MLGTTMYGQAPTMNVASQIAAGEDEDGSCAGAESIDNHHIHYETPALEDGGGGVGGVMEDVTSDSLYVSGSGGPEMSVQRSDDSSQLTLSFRGQVYVFDSITPDKVQAVLLLLGGCELSSGSQCVEIAPQNQRGAMEYPGRCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGSNSWGTVQESGQDDSQSETLCTHCGISSKFTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAHAEQVMSASSLPHVALDDQVDEGNESDSRTAIPAHNNLVTFSDNENPALISDR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2269 318 Pfam GATA zinc finger 215 251 IPR000679 GO:0006355|GO:0043565
Dere05g2269 318 CDD ZnF_GATA 215 260 IPR000679 GO:0006355|GO:0043565
Dere05g2269 318 ProSitePatterns GATA-type zinc finger domain. 215 242 IPR000679 GO:0006355|GO:0043565
Dere05g2269 318 Gene3D - 205 267 IPR013088 GO:0006355|GO:0008270
Dere05g2269 318 MobiDBLite consensus disorder prediction 294 318 - -
Dere05g2269 318 ProSiteProfiles GATA-type zinc finger domain profile. 209 268 IPR000679 GO:0006355|GO:0043565
Dere05g2269 318 PANTHER GATA TRANSCRIPTION FACTOR 28 25 307 IPR045280 GO:0006355
Dere05g2269 318 Pfam CCT motif 147 189 IPR010402 GO:0005515
Dere05g2269 318 MobiDBLite consensus disorder prediction 182 212 - -
Dere05g2269 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 261 - -
Dere05g2269 318 SMART tify_2 80 115 IPR010399 -
Dere05g2269 318 SMART GATA_3 209 262 IPR000679 GO:0006355|GO:0043565
Dere05g2269 318 ProSiteProfiles CCT domain profile. 147 189 IPR010402 GO:0005515
Dere05g2269 318 MobiDBLite consensus disorder prediction 284 318 - -
Dere05g2269 318 MobiDBLite consensus disorder prediction 188 212 - -
Dere05g2269 318 ProSiteProfiles Tify domain profile. 80 115 IPR010399 -
Dere05g2269 318 Pfam tify domain 84 114 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2269 Dere-ChrDere05 32959310 32964293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2269 54 317 Tify Gene Family AT4G24470 54.945 3.33e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere05g2269 CCT 4.1e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2269 05 32959310 32964293 Dere05g2269 05 32959310 32964293 ECH