Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2262 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCAACGAGCAGGCAAGTAACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTGGCAATCCTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCCAGCACTGGCAAGCTCTATGATTTCGCCAACACAAGCATGAAATCAGTAATTGAACGATACAACAAAGGAAAAGAGGAACACCATCAACTTGGAAGTTCAACCTCTGAAGTCAAGTATTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTGCAAGAAAATCACCGGCAAATGATGGGAGAAGAACTTTCAGGTTTGAGTGTCAAAGAATTACGAAGTTTGGAGAGCCAGTTGGAAATTAGCCTTCGGGGTGTCCGTTTGAAAAAGGATCAACTTTTAATGGACGAAATACAGGAACTAAACCGAAAGGGAAACCTCTTGCATCAAGAAAATGTGGAACTGTGTAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTAAAAAAGAAGAGATGGAAACGGAACAAACAGAAATTCCATTCTCACCAATGGTCTAGGCATAGGCGAGGATTTGCATGCACCTGTGAATCTCCAGCTCAGCCAGCCTCATCAACCAAACTGAGAGACACCTTCAGGAGCCACAAAGTTGGGCAGATTGCAACTGCATTGATGCATCTACAGGGGATTTATGTATCATGA 738 0.4377 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFANTSMKSVIERYNKGKEEHHQLGSSTSEVKYWQREAAMLRQQLQNLQENHRQMMGEELSGLSVKELRSLESQLEISLRGVRLKKDQLLMDEIQELNRKGNLLHQENVELCKKVNLIRQENMELKKKRWKRNKQKFHSHQWSRHRRGFACTCESPAQPASSTKLRDTFRSHKVGQIATALMHLQGIYVS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2262 245 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Dere05g2262 245 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Dere05g2262 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Dere05g2262 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere05g2262 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere05g2262 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Dere05g2262 245 Coils Coil 86 113 - -
Dere05g2262 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere05g2262 245 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere05g2262 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2262 Dere-ChrDere05 32818891 32835204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2262 1 192 MADS-box Gene Family AT4G37940 67.708 3.35e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere05g2262 K-box 8.1e-28 No_clan