Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2252 ATGGAGGTGTTTGAACATGATTTCTTGGAGGAATTATTAACTCTAAGAAGAGAAACATGGGACACCATTCCTAGTCCAACAGAAGAAAACCAGCCCTTCTTCTCTAATGCTTACCATAGTTTTGACTATTTTGATCCAAACTCTCTTGCTTTTCTCCCAAATTTTTCGTCTCAAGAAGTCCCTCAGAGTTACAACAACTATGATTCCTTCAATGAAATCTACGGCTCATTACTTGACGAATTCTCAGCACCCCAGATCATTCATGATTCATCATCCTATTCCACCCTTGATTCTACTCCACTTAATACCCCTCCTTTTCTGGGTCAAGACGATAACAACCCCTTGTCGTCTATGATGGAGGAAGAGGGTCTGTTTGGCGAAGAGCTTCAGAGTTTGGACCTCGAAACGACATGTAAGACAGAGTCGAGCAGCCATTCCCTTGAAATGCCAGTGATGTTCAACATGGGCACTTGTGGTTTGGAAAGAAAGAATCGACCCAAGAAACTGCAGGGACAGCCCTCCAAGAATCTAATGGCCGAGAGGCGAAGAAGAAAGAGACTAAACGACCGCCTCTCCATGCTTAGATCAATTGTCCCTAAGATTAGTAAGATGGACAGAACATCTATACTAGGAGACACCATAGACTACATGAAAGAACTCCTGGAGAAGGTTAAAAATTTGCAGCAAGAAACAGATACAGATTCAAACATGGTGAGCATTTTCAAGGATGTGAAGCCAAATGAGATCGTAGTGAGAAATTCACCCAAGTTTGATGTGAAGAGAAGGAATGTGGACACGAGGGTTGAAGTATGCTGCGCAGGGAAGCCAGGCTTCTTGCTATCTACAGTGAACACGTTGGAAGCCTTGGGTCTTGAGATTCAGCAATGTGTCATCAGCTGTTTCAATGATTTTACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAGAAGACAATACTGAGTTCAGAAAATATAAAGCAAGCGTTATTTAGAAGTGCAGGTTATGGAGGAAGATGTTTTTGA 1023 0.4252 MEVFEHDFLEELLTLRRETWDTIPSPTEENQPFFSNAYHSFDYFDPNSLAFLPNFSSQEVPQSYNNYDSFNEIYGSLLDEFSAPQIIHDSSSYSTLDSTPLNTPPFLGQDDNNPLSSMMEEEGLFGEELQSLDLETTCKTESSSHSLEMPVMFNMGTCGLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKVKNLQQETDTDSNMVSIFKDVKPNEIVVRNSPKFDVKRRNVDTRVEVCCAGKPGFLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQKTILSSENIKQALFRSAGYGGRCF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2252 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Dere05g2252 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 335 - -
Dere05g2252 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 233 IPR036638 GO:0046983
Dere05g2252 340 SMART finulus 177 226 IPR011598 GO:0046983
Dere05g2252 340 Pfam Helix-loop-helix DNA-binding domain 177 220 IPR011598 GO:0046983
Dere05g2252 340 Gene3D - 179 253 IPR036638 GO:0046983
Dere05g2252 340 Coils Coil 210 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2252 Dere-ChrDere05 32663346 32664675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2252 162 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.736 1.81e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g2252 HLH 7.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2252 05 32663346 32664675 Dere05g2252 05 32663346 32664675 ECH