Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2250 ATGGGATTATCTGATTCTTCTTCCGTGGACAGCTCAGTTCTGTCCTTCTCAGATGAGAGTAAAAGTAATCTGAATCTGAAAGCCACAGAGCTCAGACTTGGGCTTCCGGGATCTCAGTCTCCGGAACGAGACTCGAATCTCTGCTTGAGAAGCTCAACCCAATTTAATGAGAAACCCTTATTTCCTTTGCGCCCTTTAACTGATGATCACCACTCTTCATCAAAGACTGCTGTCTTGGGTAGCAAAAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGCGAAATTTGTCACTAATTCAGAGGTCAATAATGTACTGCCCCCCAGGCCTTCTCATAACATGGGATTAAAAACCAGCACTATGCTTGAGAATCTGGGAGCTCAAGCCAAAGCCAAAGAAGCACCACCAACAAACGCAGCACTTGAGAGGCCTCATGGTGTCAATGAAACCAGACCTAACCTTGAAAGTTCTGCAAATAATAATAGCAATGCACCTGCTACCAAGGCACAGGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAAGAATTCATTGGCTACTACTTCAAAGAATGCCGAAGAAGTAGATGGAAAAGCGGGGCCTGGTGCTCTGTTCATCAAAGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCAGAACTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATGTGGGCCTCATGGAACTCTGGGCAGGGAGATTTTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTAACTTATGAGGACAAAGATGGGGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTCATTGATACATGCAGGAGGCTTAGGATCATGAAGAGTTCCGATGCCATAGGTCTAGCCCCCAGGGCTGTGGAAAAAAGCAAGAGCAGGAACTAG 975 0.4533 MGLSDSSSVDSSVLSFSDESKSNLNLKATELRLGLPGSQSPERDSNLCLRSSTQFNEKPLFPLRPLTDDHHSSSKTAVLGSKRGFSDAMNGFSEAKFVTNSEVNNVLPPRPSHNMGLKTSTMLENLGAQAKAKEAPPTNAALERPHGVNETRPNLESSANNNSNAPATKAQVVGWPPIRSFRKNSLATTSKNAEEVDGKAGPGALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQCGPHGTLGREILNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2250 324 Gene3D - 199 318 - -
Dere05g2250 324 MobiDBLite consensus disorder prediction 151 168 - -
Dere05g2250 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 311 IPR003311 GO:0005634|GO:0006355
Dere05g2250 324 MobiDBLite consensus disorder prediction 133 168 - -
Dere05g2250 324 SUPERFAMILY CAD & PB1 domains 202 305 - -
Dere05g2250 324 Pfam AUX/IAA family 29 315 IPR033389 -
Dere05g2250 324 ProSiteProfiles PB1 domain profile. 204 306 IPR000270 GO:0005515
Dere05g2250 324 FunFam Auxin-responsive protein 199 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2250 Dere-ChrDere05 32635760 32638211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2250 218 309 B3 DNA Binding Superfamily AT1G19220 31.522 1.85e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere05g2250 AUX_IAA 5.9e-91 CL0072