Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2248 ATGGGTACGGGTTGGAGAAGAGCCTTTTGCACTCGCGATCCTGAATCCACCATATCGGATAAGCAACACAGAGGCACGAGTCCTAGCCCCAGCCCCAGAAGCTGTGTTCGATTGGGTTTTCTCTCCGGTGGAAGCAACCCTTCTACTCCACGCTTGCAGCAATCTCAGGCTGTGTCTAGTCCAAGCTTGCGTTGCCGAACAGTTTCAGAAGCAGCAAACGTGAGTGACAGTCCCAGATTTCAAAACAAAAATACTCCCAGAGCAACCAAGTCCCCTAAAATCAGTTCGACCTCAAATCCCACTTCTCCTCGTTCTCCTTTGAAGTTGTCTCTCTTCAAGAACAGCTTCAAATTCAGAAGTAGTTGTGGAATCTGTTTGAATAGCGTGAAAACAGGTCAGGGAACGGCCATTTACACTGCAGAATGTGGTCACGCCTTTCACTTTCCCTGTATCGCGGCTTATGTACGCAAGCATGGAAGCCTTGTCTGCCCCATCTGCAGCGCTAACTGGAAAGACGTACCTCTGCTCGCCGTACACAAGAATCTCGCCTCAGAATCCGATGAAAAGAACGACGTCGTTGTTGAGAAGAGCGTCGAAAAACCAAATGCCACCGAGAAGAGGACAGAAAACTCGTCTCCAGTTTTCAGAACCAAGCCTATTGAACCGCCTCAACAATTACAACGACAACTGCCAAAGCATTCCGATTCGTACAGGTCCTACAACGACGACGAGCCACTCCTATCTCCTACCTCCGGTGGCCGAATCATTCCAATACCTGAAGCTGACGAAAACGCCGAGGAAGAGGAAGACGAAGATGAAGTTGAAGAATTCCAGGGATTTTTCGCCAATGGAAAAGCTTCTTCCTCAGTCAAATCCTACTCTGATGACTTGCAAATAGACGATAAAGATTCCAGGAACGTTCAGGTGAAGTTGATCCCCGAGTGTGCCGTAGTCTCAGTCTCTCGAACTCACGAGACTTATGCCTTGGTTATAAGAGTGAAGGCTCCTCCGCCGCCACCTTTGGCCCGGAGCAGCAATACCAGTATGACGCCGCTCCTTGGTTCGTCGCAGCGAGCTCCCATAGATCTCGTGACGGTTCTTGACGTAGGTGGAAGCATGACGGGTGCTAAGCTGCACATGCTAAAGCGCGCGATGCGTTTGGTAATTTACTCTCTTGGCCCAGCCGACAGGCTCTCCATAGTGGCTTTCTCGGCTACTTCCAAGCGGCTCTTACCCTTGAGACGGATGACGGCTCAAGGACAGCGCGTGGCTCGGCGCATCATTGATCGGCTCGTCCCTGGCCAAGGGACTTGCGTGGGCGATGCTCTGAGAAAAGCTACTAAAGTGCTCGAGGACCGGAGGGAGAGGAACCCAGTGGCTAGTGTCATGCTCTTATCGGACAGTCAAGATGAACGAGTCCAAACCAGTAATAACAGCAATCAACGAAAATCCTCGAGCCACGCGTCCTCGACCCGGTTCTCCCACATCGAGATTCCGGTTCATGCATTCGGGTTTGGAAAAAAGAGCGGTTTCAGCCAGGAGCCGGCTGATAATGCATTTGCCAAGTGCGTTGGTGGGTTATTGAGTGTGGTCGTACAGGACTTGATAATTCAGCTCGGCTTCGGTTCCGGCTCCTCGCCGGCTGAAATCAGCGGCATTTACTTGTGCAGCGGAAGGCCCACAGCGCTGAGCTCAAGCTGCATACGGCTTGGCGATTTGTACGCCGGGGAAGAGAGGGAGCTACTAGTGGAGCTGAGAGTTCCGGCGTCGGCTTTGGGGACCCACCACGTGATGAGGGTACGGTGCCTGTATAAGGACCCTGTTTCTCAAGAGATCGTATCCAGTAGGGAACAGTCCCTACTGGTTCCGCCACCTCAGGCTACCCGAAACGAACGGTTGAGGAATCTCTTCATAACGACTCGGGCCATAGCCGAATCTCGGAGGCTTGTGGACCACAACGACTTCGCCAGCGCTCATCATTTGCTGGTTTCGGCTCGATCGCTTTTGATGCAGGCTAAGTCGGGTTCGGCCGAGGAGTACGTGCGCGGGTTAGAAGCTGAGCTGGCAGAGCTGCATTGGCGGACACAGATTCCGATGGAGCAGCAGCAACGAAGGAGAGGGAACGAGAGGGAGATGAATATGATGAATTTGGTAGATGAAAACGGCGAGCCGCTGACGCCGACGTCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGGTGGCCATCATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGAATGATAATTAACCTCAAAACTAATGCAAAACAAGAAGAAACCCACCGAGTGCCGTGCATTGAGATAAATTTTATGGTCAGCAGGATAATTGTTTATACAATTAAGAGAATGAAAACTTTATTTGAACATCCTGAGCTGAGAAGAAACCAGCACAACAAAGATATTCAAAACCAGTCTCATCTCAGTATGTAA 2472 0.5121 MGTGWRRAFCTRDPESTISDKQHRGTSPSPSPRSCVRLGFLSGGSNPSTPRLQQSQAVSSPSLRCRTVSEAANVSDSPRFQNKNTPRATKSPKISSTSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAYVRKHGSLVCPICSANWKDVPLLAVHKNLASESDEKNDVVVEKSVEKPNATEKRTENSSPVFRTKPIEPPQQLQRQLPKHSDSYRSYNDDEPLLSPTSGGRIIPIPEADENAEEEEDEDEVEEFQGFFANGKASSSVKSYSDDLQIDDKDSRNVQVKLIPECAVVSVSRTHETYALVIRVKAPPPPPLARSSNTSMTPLLGSSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVIYSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIIDRLVPGQGTCVGDALRKATKVLEDRRERNPVASVMLLSDSQDERVQTSNNSNQRKSSSHASSTRFSHIEIPVHAFGFGKKSGFSQEPADNAFAKCVGGLLSVVVQDLIIQLGFGSGSSPAEISGIYLCSGRPTALSSSCIRLGDLYAGEERELLVELRVPASALGTHHVMRVRCLYKDPVSQEIVSSREQSLLVPPPQATRNERLRNLFITTRAIAESRRLVDHNDFASAHHLLVSARSLLMQAKSGSAEEYVRGLEAELAELHWRTQIPMEQQQRRRGNEREMNMMNLVDENGEPLTPTSAWRAAEKLAKVAIMKKSLNRVSDLHGFENARMIINLKTNAKQEETHRVPCIEINFMVSRIIVYTIKRMKTLFEHPELRRNQHNKDIQNQSHLSM 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2248 823 MobiDBLite consensus disorder prediction 1 106 - -
Dere05g2248 823 MobiDBLite consensus disorder prediction 207 234 - -
Dere05g2248 823 CDD vWA_C3HC4_type 361 532 - -
Dere05g2248 823 SMART ring_2 122 166 IPR001841 -
Dere05g2248 823 SUPERFAMILY vWA-like 360 511 IPR036465 -
Dere05g2248 823 ProSiteProfiles Zinc finger RING-type profile. 122 167 IPR001841 -
Dere05g2248 823 SUPERFAMILY RING/U-box 115 172 - -
Dere05g2248 823 SMART VWA_4 360 545 IPR002035 -
Dere05g2248 823 MobiDBLite consensus disorder prediction 41 106 - -
Dere05g2248 823 MobiDBLite consensus disorder prediction 462 492 - -
Dere05g2248 823 MobiDBLite consensus disorder prediction 186 257 - -
Dere05g2248 823 MobiDBLite consensus disorder prediction 186 206 - -
Dere05g2248 823 Pfam Ring finger domain 121 166 IPR001841 -
Dere05g2248 823 Pfam von Willebrand factor type A domain 363 468 IPR002035 -
Dere05g2248 823 MobiDBLite consensus disorder prediction 461 492 - -
Dere05g2248 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 240 IPR013083 -
Dere05g2248 823 Gene3D von Willebrand factor, type A domain 362 527 IPR036465 -
Dere05g2248 823 CDD RING-H2_WAVH2 119 172 - -
Dere05g2248 823 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 120 757 - -
Dere05g2248 823 ProSiteProfiles VWFA domain profile. 362 506 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2248 Dere-ChrDere05 32614944 32619921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2248 121 166 C3H Transcription Factor Family AT5G66070 41.304 3.46e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2248 05 32614944 32619921 Dere05g2248 05 32614944 32619921 ECH