Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2233 ATGCTAGTCCCCTCCACTTCCCGGCGTGTCTCTTCCATCTTCTACCTCCTCTGTTTCCTTTCAATCCTCGTCGGAGTCGACTCCAATGACGAACCAGAACGTCAATTTCTAATAAACCTCAAATCCGTACTTCAGACATCAAACCCCAGTGTGTTTGACTCGTGGAATGCTTCTAATTCCATATGCAATTTCAACGGAATCACGTGTGACTCAGAAGGTTGGGTGAACGAAATCGATCTCTCCAATCACAGGCTTTCTGGGGTTCTTCCTTTTGACTCCATTTGCCAGCTCCAATCACTCGAGAAGCTCTCCTTTGGGTTCAATTCATTGTATGGAAAAATCTCACAGGATTTGAAAAACTGTGTCAATTTGAAGTACTTGGACTTGGGCAATAATATTTTCTCAGGGCCATTCCCTGACATATCTCCTCTCAACCAATTGCAGTTTCTGTATATAAATCAAAGTGGGCTTTCTGGAACTTTCCCATGGAAGTCGCTACAAAATATGACGAGCCTTGTGGTGTTAAGCGTCGGAGATAACCCCTTTGACCCAACTCCATTTCCTACTGAAGTTGTGAACCTAAAGAACTTGAAATGGCTGTATCTGTCAAATTGCACACTTGATGGGAAAATACCAGCAGGGATAGGTAACCTCACAGAGCTTATAAACTTAGAATTTTCTGACAACTTTATATCTGGGGAGATTCCATCGGAGGTCGGGAAGCTTCGGAATCTGTGGCAGCTTGAGATGTACAACAATTCGTTGACAGGAAAACTTCCAGTTGGATTAAGAAACCTCACGGTGTTAGAGTACTTTGATGGGTCCATGAATAACTTGGAAGGTGATCTCTCTGAATTGAGGTTCTTGACTAATCTCATTTCTCTGCAATTATTTGAAAACAATTTATCCGGGGAAATCCCCCCGGAGTTTGGTGAATTCAGGAAGCTCGTGAACCTCTCGTTATACAGGAACAGATTGACTGGTCCTATTCCTCAAAAGATTGGATCTTGGGCTGAGTTCGATTTCATTGATGTGTCCGAGAATTTCTTGACGGGTCCTATTCCTCCGGATATGTGCAATAAGGGGAAGATGCACGCGCTGCTCGTGCTTCAGAACAAACTCACCGGCGAAATTCCGACCACCTATGCGAACTGTTGGTCTCTGCGTCGATTGAGAGTGAGCAATAACTCTCTCTCCGGTACTATCCCTCCTGGGATATGGGGACTGCCGAACGCGGAAATTATCGATATTGAATTGAATCGCTTGGAAGGTTCGATTACTTCAGATATCAAGAACGCGAAGACTCTGGCTGAAATATACGCAAGAGGTAACCTCTTATCCGGTGAAATACCAGAAGAGATTTCAGAAGCCAACTCCTTGGTGACAATTGACTTGAGCGAGAATCAAATTTCTGGGAAAATTCCAACGGGTATCGGTGAGCTTAAACAATTAAGCAGACTTAATTTAGTGAGCAACAAGTTCTTTGGGTCAATCCCAGATTCTCTGGGTTCGTGTGTATCCCTCGGCGACATTGAACTAGCACAAAATTCACTGTCTGGAAAAATGCCTTCATCTTTGGGTTCTTTACCAGCTCTTAATTCTCTGAACTTGTCTAAAAACGAGCTCTCCGGCGAGATTCCAACGAGTTTTGCACGCCTACGTTTGAGCCTCTTTGATTTATCAGATAACAAATTAACAGGTCCAATTCCACAAACTCTGTCCATTCAAGCTTACAAGGGAAGCCTTAATGGAAACCCAGGTCTCTGCACCTTCGACGTTGACATCACCTCCTTCAAGCGTTGCTCTGTAAATTCCGGCATTCCAAGAGACGTCCGTACATTCCTCGTTTGCTTCTCAATAGGCTTAATGATACTCCTCCTTTGTCTAGCCCTTTACTTGCAACGAAAGAGGAAGGAGGAAGATCGTGAACGTTCTCTAAAGGAAGAATCTTGGGATATAAAATCCTTCCACGTGCTAAGCTTCACAGAGGACGAGATACTAGATTCCATCAAGCAAGAGAATCTTATAGGAAAAGGAGGCTCCGGAAACGTGTACAGAGTCACGCTTTCCAATGGCAAAGACCTCGCCGTTAAGCACATATGGAACACCGACTCCGTCGGTCGGAAAAGTAGCCGGGGCACCACTCCGATGATCGGAAAACGTGGCGGGAAATCGAAGGAATTTGATGCGGAAGTTCAGGCATTGAGCTCAATAAGGCATGTGAATGTGGTGAAGCTGTATTGCAGCATAACGAGCGAGGACTCGAGCTTGTTGGTGTATGAGTATTTGCCGAATGGGAGTCTGTGGGACAGGCTACACACGAATACGAAGATGGAGCTTGATTGGGAGACAAGGTACGAGATTGCCGTCGGAGCAGCAAAAGGATTGGAGTATCTTCATCATGGGTGCGATAGGCCTGTGATTCACAGGGACGTCAAGTCTAGCAATATTTTGTTGGATGAGTTTTTGAAGCCCAGGATTGCTGATTTTGGGTTAGCGAAGATTGTTCAAGCCAACGTTGGCAAGGATTCTACTCATGTTGTTGCTGGAACTCATGGCTATATTGCTCCTGAATATGGGTACACATACAAAGTGAACGAGAAGAGCGATGTGTATAGCTTTGGCGTGGTGTTAATGGAGCTGGTGACAGGGAAGAGGCCAATAGAACCGGAATTTGGAGAGAACGAAGACATAGTGAGCTGGGTTTGCAGCAAACTGCAGCAACACAGCAAAGGCATCATAATGGGAGTGGTAGACTCCAGAATCCCAGAAATTTACAGAGAAGATGCTATCAAGGTGCTGAGAATAGCTATTTTGTGCACCACCAGGCTTCCAGCACTGAGACCCACCATGCGAAGCGTGGTTCAAATGCTCCAGGAAGCAGAGCCCTGCAAATTACTGGGAATCCTCATTACCAAAGACGCATCCCCCACCAAAGTGCAAGCGAATTAA 2952 0.4526 MLVPSTSRRVSSIFYLLCFLSILVGVDSNDEPERQFLINLKSVLQTSNPSVFDSWNASNSICNFNGITCDSEGWVNEIDLSNHRLSGVLPFDSICQLQSLEKLSFGFNSLYGKISQDLKNCVNLKYLDLGNNIFSGPFPDISPLNQLQFLYINQSGLSGTFPWKSLQNMTSLVVLSVGDNPFDPTPFPTEVVNLKNLKWLYLSNCTLDGKIPAGIGNLTELINLEFSDNFISGEIPSEVGKLRNLWQLEMYNNSLTGKLPVGLRNLTVLEYFDGSMNNLEGDLSELRFLTNLISLQLFENNLSGEIPPEFGEFRKLVNLSLYRNRLTGPIPQKIGSWAEFDFIDVSENFLTGPIPPDMCNKGKMHALLVLQNKLTGEIPTTYANCWSLRRLRVSNNSLSGTIPPGIWGLPNAEIIDIELNRLEGSITSDIKNAKTLAEIYARGNLLSGEIPEEISEANSLVTIDLSENQISGKIPTGIGELKQLSRLNLVSNKFFGSIPDSLGSCVSLGDIELAQNSLSGKMPSSLGSLPALNSLNLSKNELSGEIPTSFARLRLSLFDLSDNKLTGPIPQTLSIQAYKGSLNGNPGLCTFDVDITSFKRCSVNSGIPRDVRTFLVCFSIGLMILLLCLALYLQRKRKEEDRERSLKEESWDIKSFHVLSFTEDEILDSIKQENLIGKGGSGNVYRVTLSNGKDLAVKHIWNTDSVGRKSSRGTTPMIGKRGGKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNTKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVGKDSTHVVAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEPEFGENEDIVSWVCSKLQQHSKGIIMGVVDSRIPEIYREDAIKVLRIAILCTTRLPALRPTMRSVVQMLQEAEPCKLLGILITKDASPTKVQAN 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2233 983 SMART serkin_6 670 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2233 983 Gene3D Ribonuclease Inhibitor 187 287 IPR032675 -
Dere05g2233 983 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 603 - -
Dere05g2233 983 SUPERFAMILY L domain-like 286 600 - -
Dere05g2233 983 Gene3D Phosphorylase Kinase; domain 1 654 762 - -
Dere05g2233 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Dere05g2233 983 Gene3D Ribonuclease Inhibitor 475 582 IPR032675 -
Dere05g2233 983 Gene3D Ribonuclease Inhibitor 359 474 IPR032675 -
Dere05g2233 983 Coils Coil 629 649 - -
Dere05g2233 983 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Dere05g2233 983 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Dere05g2233 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 27 958 - -
Dere05g2233 983 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Dere05g2233 983 Gene3D Transferase(Phosphotransferase) domain 1 763 966 - -
Dere05g2233 983 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Dere05g2233 983 Pfam Leucine Rich Repeat 123 139 IPR001611 GO:0005515
Dere05g2233 983 SUPERFAMILY Protein kinase-like (PK-like) 659 958 IPR011009 -
Dere05g2233 983 SUPERFAMILY L domain-like 62 359 - -
Dere05g2233 983 Gene3D Ribonuclease Inhibitor 288 358 IPR032675 -
Dere05g2233 983 ProSiteProfiles Protein kinase domain profile. 670 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2233 983 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 763 969 - -
Dere05g2233 983 FunFam Receptor-like protein kinase HAIKU2 653 762 - -
Dere05g2233 983 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Dere05g2233 983 Pfam Protein kinase domain 672 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2233 983 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2233 Dere-ChrDere05 32486322 32489369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2233 14 975 Receptor kinase-like Gene Family AT1G09970 64.426 0.0 1215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere05g2233 Pkinase 7.5e-43 CL0016