Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2232 ATGGATCGTCAATCCATCTTCTTTCTTCTTGGACTCATTGTTTCCATGTCGTATGTTTCACAAGCCATCAGTGACAGCCAATTTCATTTTTTTTCTCTAATGAAGAAGTCTCTCTCGGGGAACTATCCGCTAAATTGGGATGTCACAGGAGGAAAACCTGTCTGCAACTTCACTGGAGTTAGCTGCAACAACCAAGGGGAAGTCATCAATCTTGACATCTCCGGTTGGTCACTTTCAGGAAACTTCCCATCAGATATATGCTCATATCTACCAGAGTTACGTTTTCTACGTCTCGGCCACAACAATCGTTTGAGAGGAAAATTTCTTGATAGCATAACCAACTGTTCCCACTTGGAAGAGCTAAACATGAATCATGTGTACCATACAGGAACCCTTCCAGATTTCTCACCTATGAAATCTCTGAGGATCCTGGATTTGTCATACAACCTCTTCACCGGTCAGTTCCCCATGTCAGTATTTAATCTCACCAATCTTGAGGTGCTTAACTTCAATGAGAATGGCGCTTTCAACTTATGGGAGCTGCCAGAGGATATGTACAGGATGAAAAATCTCAAGTCTGTGATCTTGACGACATGCATGGTGCGTGGCCGAATCCCTGCATCCATAGGAAACGTGTCGTCTCTGGTTGATCTTGAATTGAGCGGAAATTTCCTCACGGGTCAAATTCCTGTAGAACTTGGATTGCTGAAAAACTTGCAGCAGCTTGAGCTTTACTATAACCAACTTGTAGGCAATATACCCGAGGAGCTAGGAAATCTCACAGAGCTTAGGGATTTGGACATGTCAGTCAATAAGTTGTCGGGAAGTCTCCCAGAATCTGTATGTCGCCTTGCCAAGCTTGAAGTCTTGCAGCTATACAACAATAGCCTCACGGGAAAAATCCCAGGTGTGATAGCAAACTCAAAATCCTTAAGAATATTATCCCTTTATGATAATTTTTTGACCGGAGAAGTCCCAAGAAATCTGGGTCAGTTCTCTGGAATGGTAGTTCTAGACTTATCGGAAAACAGATTGTCTGGTCCATTGCCTACAGAGGTTTGTAAGGGAGGTAAACTGCTCTACTTTCTTGTTCTGGATAATATGTTTTCTGGAGAACTACCTGACAGTTATGCAACATGCTGGACTCTGTTAAGGTTTCGAGTCAATAATAACCATTTGGTGGGTTCAATTCCGGAGGGACTCCTTGGCCTACCACACGTTTCAATAATTGATTTGAGTAACAATAATTTGAGTGGTCCAATTTTTGAGACCATTGGAAATCCTAGAAACTTGTCAGAACTATTCATACAGAGGAACAGGATTTCAGGCGTTATACCTCCCACAATCTCTCGAGCTACCAGTCTGGTCAAGATTGATTTCAGCAATAACCTTCTGTCTGGCCCAATACCTTCCGAAATTGGCAATCTTAAAAAGCTTAATTTACTGATGCTGCAAGGGAATAAGCTGAATTCTTCCATCCCCAGCTCACTTTCTTTGTTAAAGTCCCTCAACGTTCTTGATCTCTCTAACAACCTTTTGACAGGGAGCATCCCTGAAAGTTTCTCTGATCTGCTACCCAACTCTATCAACTTTTCAAATAACTTGCTTTCTGGTCCAATTCCTCCCTCGTTGATAAAAGGAGGTCTAGTTGAAAGCTTCTCAGGGAACCCTGGTCTCTGTGTGTCACAAGTCTATGCTAATTCATCGGATCAAAATTTTCCCATATGTTCAAAGACAAACAACAAAAAGGGGCTAAACACCTTCTGGGTAGCCGGGATTTCGGTGGTTTTGATCATAACAGGAGCTGCCTTGTTTCTGAAACGTAGATGTAGCAAGGAGAGAGCTGCGGTGGAACATGACGAAACACTGTCTTCGTCATTCTCCTCTTATGAAGTGAAGAGCTTTCACAGAATAACAATTGAACAACGGGAGATCACTGAGGCCATGGTCGAAAAGAATATAGTGGGGCATGGAGGATCTGGGACAGTGTACAAGATTGAGTTGAAAAGCGGTGAATTTGTGGCAGTGAAAGGACTGTGGAGTCGAAAATCAAAGGATTCGGCTCCAGAGGATGGGTTAGTTTTGGACAAGACATTGAAAACTGAGGTGGAGACCCTGGGAAATATAAGACACAAGAACATTGTAAAACTGTACTGCTACTTCTCGAGTTTGGACAGCAGCTTGTTAGTTTATGAGTACATGCCGAATGGTAATCTTTGGGATGCTTTGCACAAAGGTTCGGTCGATTTGGATTGGCCTACTCGCCATAAGATAGCACTGGGGACAGCACAGGGTCTGGCATACCTCCACCACGATTTGCTCCCTCCGATTATTCATAGAGACATCAAGTCAACAAATATCCTTCTGGATGTTAATTACCAACCCAAGGTTGCTGATTTCGGTATCGCCAAGGTATTGCAGGCAAGAGGAGGGAAAGATTCCACATCAACTGTTATTGCAGGCACATACGGTTACTTGGCACCAGAATATGCATATTCATCCAGAGCAACTACCAAGTGTGATGTCTACAGTTTTGGGGTGATTTTAATGGAACTGATAACTGGGAAGAAGCCTGTGGAGGCAGATTTTGGAGAGAACAGAAACATCGTATATTGGGTTTCAAATAAGGTGGACAGCAAGGAAGGGGCTAGTGAGGTATTAGACAAGCGATTAGTAGGGTCATACAAGGAGGAAATGATTCAAGTGCTCCGAATTGCCATCCGCTGCACCTACAAGGCTCCAGCTCTACGACCGACCATGAAAGAGGTAGTTCAGGTGCTGATTAAGGCAGATCCGTCTAGCAAGTTGTCCAATAAGACCAAAGAAACATCAAATGCCACCATGACAAAGAACCCATTTGAATTGTAG 2868 0.4327 MDRQSIFFLLGLIVSMSYVSQAISDSQFHFFSLMKKSLSGNYPLNWDVTGGKPVCNFTGVSCNNQGEVINLDISGWSLSGNFPSDICSYLPELRFLRLGHNNRLRGKFLDSITNCSHLEELNMNHVYHTGTLPDFSPMKSLRILDLSYNLFTGQFPMSVFNLTNLEVLNFNENGAFNLWELPEDMYRMKNLKSVILTTCMVRGRIPASIGNVSSLVDLELSGNFLTGQIPVELGLLKNLQQLELYYNQLVGNIPEELGNLTELRDLDMSVNKLSGSLPESVCRLAKLEVLQLYNNSLTGKIPGVIANSKSLRILSLYDNFLTGEVPRNLGQFSGMVVLDLSENRLSGPLPTEVCKGGKLLYFLVLDNMFSGELPDSYATCWTLLRFRVNNNHLVGSIPEGLLGLPHVSIIDLSNNNLSGPIFETIGNPRNLSELFIQRNRISGVIPPTISRATSLVKIDFSNNLLSGPIPSEIGNLKKLNLLMLQGNKLNSSIPSSLSLLKSLNVLDLSNNLLTGSIPESFSDLLPNSINFSNNLLSGPIPPSLIKGGLVESFSGNPGLCVSQVYANSSDQNFPICSKTNNKKGLNTFWVAGISVVLIITGAALFLKRRCSKERAAVEHDETLSSSFSSYEVKSFHRITIEQREITEAMVEKNIVGHGGSGTVYKIELKSGEFVAVKGLWSRKSKDSAPEDGLVLDKTLKTEVETLGNIRHKNIVKLYCYFSSLDSSLLVYEYMPNGNLWDALHKGSVDLDWPTRHKIALGTAQGLAYLHHDLLPPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTSTVIAGTYGYLAPEYAYSSRATTKCDVYSFGVILMELITGKKPVEADFGENRNIVYWVSNKVDSKEGASEVLDKRLVGSYKEEMIQVLRIAIRCTYKAPALRPTMKEVVQVLIKADPSSKLSNKTKETSNATMTKNPFEL 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2232 955 MobiDBLite consensus disorder prediction 935 955 - -
Dere05g2232 955 FunFam Receptor protein-tyrosine kinase CEPR1 284 570 - -
Dere05g2232 955 FunFam Leucine-rich repeat receptor-like protein kinase 178 280 - -
Dere05g2232 955 Gene3D Transferase(Phosphotransferase) domain 1 734 952 - -
Dere05g2232 955 Gene3D Phosphorylase Kinase; domain 1 631 733 - -
Dere05g2232 955 Gene3D Ribonuclease Inhibitor 307 570 IPR032675 -
Dere05g2232 955 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Dere05g2232 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Dere05g2232 955 PRINTS Leucine-rich repeat signature 335 348 - -
Dere05g2232 955 PRINTS Leucine-rich repeat signature 500 513 - -
Dere05g2232 955 ProSiteProfiles Protein kinase domain profile. 649 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2232 955 SUPERFAMILY RNI-like 68 368 - -
Dere05g2232 955 Pfam Protein kinase domain 651 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2232 955 Pfam Leucine rich repeat 429 489 IPR001611 GO:0005515
Dere05g2232 955 SMART LRR_typ_2 162 188 IPR003591 -
Dere05g2232 955 SMART LRR_typ_2 500 523 IPR003591 -
Dere05g2232 955 SMART LRR_typ_2 236 260 IPR003591 -
Dere05g2232 955 SMART LRR_typ_2 476 499 IPR003591 -
Dere05g2232 955 SMART LRR_typ_2 332 356 IPR003591 -
Dere05g2232 955 SMART LRR_typ_2 284 307 IPR003591 -
Dere05g2232 955 SUPERFAMILY Protein kinase-like (PK-like) 634 927 IPR011009 -
Dere05g2232 955 SUPERFAMILY L domain-like 284 542 - -
Dere05g2232 955 FunFam receptor protein-tyrosine kinase CEPR1 632 733 - -
Dere05g2232 955 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 945 - -
Dere05g2232 955 SMART serkin_6 649 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2232 955 Gene3D Ribonuclease Inhibitor 29 306 IPR032675 -
Dere05g2232 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 249 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2232 Dere-ChrDere05 32449383 32452597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2232 24 943 Receptor kinase-like Gene Family AT5G49660 66.559 0.0 1238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere05g2232 Pkinase 2.2e-47 CL0016