Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2198 ATGCCTGAACTGCGTAGCGGAGCGCGCAGAAACCGGGCATTACATAACCCAAACCCCAATCAGATCACTCAACCTCACAAGCCCACTATAAGAACTCGTCAGAGTAGGAGAACCACCGCGCAGAACAGGGGAAATCGGAAGCAGAAGAACACGATCGGGGTTGATGAAACCAATAATATTTTGATTAAAGACGTTGTTGCCGTTCCTGAATCGAGGACGTTGGGAGACAAGGAAGAAGGGAAAGAACAAGAACAACGACAAGCGCCGGACTCACCGCTTAGGGTTTTCAGAGAGGAAGTTGGACATAAAGCGATGGATGAGTACGATAGTGGTGGTCGAAGCCCCGATAAGGCTCCGGCTGGCGAAGACGAGGGCAGTACAGCTCCGCTACCTGAGAAGGTCCAGGTTGGTGGTTCGCCAGTATACAAAATTGATAGGAAATTGGGTAAAGGAGGATTTGGACAAGTCTACGTTGGTAGGCGTCTTGGAGCAACAAATCCTATTGAACGGACCGGTCCTGGAGCTATAGAGGTAGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGTTGCAACTATGGACCACCGTATGAGTGGCAGGTTTACAATGTGCTTGGTGGTAGTCATGGTGTTCCGCGAGTTCATTATAAGGGGCGGCAAGGCAATTATTATGTCATGGTAATGGATATGCTTGGCCCCAGTCTATGGGATGTGTGGAATAACAACTCACACACGATGTCCATTGAAATGGTGGCTTGTATCGCCATTGAGGCAATATCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGACCCCCTGGAACTCCTGATGAGAAAAAGCTGTTTCTTGTTGATCTTGGATTAGCTACCCGGTGGCGTGATAATTCAACAGGCCTTCATGTTGAGTATGATCAACGCCCAGATGTATTTAGGGGAACAGTACGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGCAGCAGAAGAGATGACTTGGAATCTCTTGCGTACACTCTGATCTTCCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAGATGGCAACATCCCCAGAAACTTTGTGTTGCTTTTGTCCTCAACCTTTTCGGCAGTTTGTTGAGTGTGTGGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCGAAGTATATCTCCCTGTTTGATGGAATTGTTGGTCCGAATCCAGACATCAGGCCTATAAATACTGACGGTGCTCAGAAACTCATATTTCAGGTTGGTCATAAGAGGGGACGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACTCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTTGCAGATGTGCGGCTGTCTCAACACATTGAGAAAGGAAATGAGGATGGGTTATTTATAAGCAGCGTGGCTTCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGCACGGGTTTCTCTGCACAAGTTTATGAACTCTCACCCTATTTTCTTCATAAGGAATGGATTATGGAAAAATGGGAAAAAAATTATTACATCAGTGCTATAGCAGGGGCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACTCAGTACTTGCAGCAGTCCTATAAAGTCAGTGATTCATTTCCATTCAAGTGGATTAACAAAAAATGGAGAGAAGGCTTTTATGTGACTGCCATGGCTACTGCTGGAACTAGATGGGCAATTGTCATGTCCCGCGGTGCAGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGTATTCATCGGAGGTGGGATGGTGGTTACCGCATCACATCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAGCCAGCTGATGAAACTCAAGAGACACTACGTACATCTGCTTTCCCAAGTACTCATGTCAAGGAAAAATGGGCGAAAAACTTGTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATGA 2130 0.4488 MPELRSGARRNRALHNPNPNQITQPHKPTIRTRQSRRTTAQNRGNRKQKNTIGVDETNNILIKDVVAVPESRTLGDKEEGKEQEQRQAPDSPLRVFREEVGHKAMDEYDSGGRSPDKAPAGEDEGSTAPLPEKVQVGGSPVYKIDRKLGKGGFGQVYVGRRLGATNPIERTGPGAIEVALKFEHRSSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGNYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVECVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIFQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFSAQVYELSPYFLHKEWIMEKWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2198 709 ProSitePatterns Protein kinases ATP-binding region signature. 148 181 IPR017441 GO:0005524
Dere05g2198 709 PANTHER CASEIN KINASE-RELATED 135 675 - -
Dere05g2198 709 SMART serkin_6 142 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2198 709 MobiDBLite consensus disorder prediction 1 137 - -
Dere05g2198 709 Gene3D Transferase(Phosphotransferase) domain 1 113 465 - -
Dere05g2198 709 MobiDBLite consensus disorder prediction 70 120 - -
Dere05g2198 709 SUPERFAMILY Protein kinase-like (PK-like) 142 424 IPR011009 -
Dere05g2198 709 CDD STKc_CK1 142 418 - -
Dere05g2198 709 Pfam Protein kinase domain 142 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2198 709 ProSiteProfiles Protein kinase domain profile. 142 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2198 709 FunFam casein kinase 1-like protein HD16 115 465 - -
Dere05g2198 709 MobiDBLite consensus disorder prediction 13 57 - -
Dere05g2198 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2198 Dere-ChrDere05 32113980 32118336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2198 261 418 MAP Kinase Kinase Kinase AT5G50180 26.250 2.80e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Dere05g2198 Pkinase 4.6e-15 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0752 04 7576121 7580898 Dere05g2198 05 32113980 32118336 CCT