Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2191 ATGGAAGCACCCCAGTATTTCCACGGCGGCTTTTGCCCTCAATTCATGTCCTCCGATACCAAGACCACCTCAGGCGCTGCCGTCGTCGACCATTTCATCGTCGAGGACCTCCTTGACTTCTCCAACGATGACGCTATCATCACCGACCCCGCATTTGACTCTCTTCCCGGAAACTCCACCGATTCTTCCACCATAATAAACGCCGTCGATAGCTGCAACTCCTCTACCTTCTCCGGGTGCGACCCCAATTTCACGCCCGACATTGCCTCCCGAAATTTACCCGACGTCCATTTCTCCAGCGACCTCTGCGTCCCGTGTGATGATTTGGCGGAGTTGGAATGGCTGTCGAACATTGTGGAGGAGTCATTTTCAAGCGAGGACCTGCAGAAGCTGCAGCTGATATCAGGCATGAAAGCCCCAATCGAGGAAGCATCGGAAAGACGCGAGTTGCAGCACCAAGAAACCAACCAAAACAATAGCATATTCAACTCCCAAGTGTCGGTTCCGGCCAAGGCTCGCAGCAAGCGCTCCCGCGGGCCTCCATGCAACTGGACCTCTCGCCTTCTCGTCCTCTCCCCCACCTCCTCCTCTTCCGACCCCGACGTCATCCTTCCCACCCCGGCCGGAAAGAAACCCGGAAAGTCGGCGCCCAGGAAGAAGGATAGCGGCGACGAAGGGTCCGGCGAGGGGCGCAAGTGCATGCATTGCGCCACCGATAAGACGCCGCAGTGGCGGACGGGACCCATGGGCCCCAAAACCCTTTGCAATGCTTGTGGGGTGAGATACAAATCGGGGCGGTTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACCTTCGTGCTGACGAAGCATTCGAACTCGCACCGGAAGGTGCTGGAGCTCCGACGACAGAAGGAGATGCTGAGGGCCCAGCAGCAGCAGCAGCAGCAGCAGTTTCTGCAACATCAAAACATGATGTTTGATGTGTCCAACGGTGACGATTACTTGATCCACCAACACGTGGGCCCAGATTTCCGGCAGCTCATCTAG 1029 0.5773 MEAPQYFHGGFCPQFMSSDTKTTSGAAVVDHFIVEDLLDFSNDDAIITDPAFDSLPGNSTDSSTIINAVDSCNSSTFSGCDPNFTPDIASRNLPDVHFSSDLCVPCDDLAELEWLSNIVEESFSSEDLQKLQLISGMKAPIEEASERRELQHQETNQNNSIFNSQVSVPAKARSKRSRGPPCNWTSRLLVLSPTSSSSDPDVILPTPAGKKPGKSAPRKKDSGDEGSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAQQQQQQQQFLQHQNMMFDVSNGDDYLIHQHVGPDFRQLI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2191 342 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Dere05g2191 342 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Dere05g2191 342 Coils Coil 291 311 - -
Dere05g2191 342 MobiDBLite consensus disorder prediction 154 171 - -
Dere05g2191 342 Gene3D - 226 277 IPR013088 GO:0006355|GO:0008270
Dere05g2191 342 MobiDBLite consensus disorder prediction 187 202 - -
Dere05g2191 342 PANTHER GATA TRANSCRIPTION FACTOR 30 310 - -
Dere05g2191 342 FunFam GATA transcription factor 223 310 - -
Dere05g2191 342 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Dere05g2191 342 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Dere05g2191 342 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Dere05g2191 342 MobiDBLite consensus disorder prediction 214 232 - -
Dere05g2191 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
Dere05g2191 342 MobiDBLite consensus disorder prediction 144 232 - -
Dere05g2191 342 PIRSF Txn_fac_GATA_plant 16 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2191 Dere-ChrDere05 32036641 32038080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2191 32 342 C2C2-Gata Transcription Factor Family AT5G25830 52.802 8.99e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere05g2191 GATA 1.7e-15 CL0167