Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2187 ATGAGAGTTGAGCCTCAGAATTCAGAAACAGAGAGCAGCTCAAACTCATTCTCATCTCCACCAACTTCCCCATCATCACCCCGTTCAAGAAGGGCTCTCAAAAAATCAGTCCCACAGGCCAACTCTGAGGAACCAGAATCCAAAAAGATAAAGCGCATTCGAGACTCCAACAAACACCCTGTGTATCGTGGGGTTCGCATGCGCAATTGGGGCAAATGGGTTTCTGAAATTCGCGAGCCACGCAAGAAATCTCGCATATGGCTGGGTACATTCCCCACCCCTGAAATGGCCGCAAGGGCACACGACGTCGCTGCTTTGAGCATCAAAGGTAACTCCGCCATTCTCAATTTCCCTCAACTAGCCAACTCCCTGCCTCGCCCCGCCTCTCTCTCTCCTCGCGATGTTCAGGCAGCTGCAGCAAAAGCCGCTCAAATGAATCAGTTCGACTTGCCCTTGTCATCATCGTCTTCGACATTGTCGTCATCATCCTCTGTGTCGTCGTTGGTTTCGGCAATGGAAATGTGCAGTGGTTCCGAGGAATTGAGCGAGATCATAGAGTTGCCAAGGTTGGAAACAAGTGAGGAGACGTGTGAGTTGAGGAAGGAGTTTGTGTTTGTGGACTCCGTGTCAGATGGGTGGATGTATCAGCCACCATGGTTACAGGGCATGGAAGACTGTAATGGGTACGTTGCTGAACAGTTAGCAGTGCCTGCAGAGAGTGGGATTACAAATAATCTTGATAGTTTGCTTTGGAATTACTGA 762 0.4974 MRVEPQNSETESSSNSFSSPPTSPSSPRSRRALKKSVPQANSEEPESKKIKRIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPQLANSLPRPASLSPRDVQAAAAKAAQMNQFDLPLSSSSSTLSSSSSVSSLVSAMEMCSGSEELSEIIELPRLETSEETCELRKEFVFVDSVSDGWMYQPPWLQGMEDCNGYVAEQLAVPAESGITNNLDSLLWNY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2187 253 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Dere05g2187 253 MobiDBLite consensus disorder prediction 1 36 - -
Dere05g2187 253 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Dere05g2187 253 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Dere05g2187 253 MobiDBLite consensus disorder prediction 1 59 - -
Dere05g2187 253 CDD AP2 62 118 IPR001471 GO:0003700|GO:0006355
Dere05g2187 253 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Dere05g2187 253 MobiDBLite consensus disorder prediction 41 59 - -
Dere05g2187 253 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Dere05g2187 253 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Dere05g2187 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 194 - -
Dere05g2187 253 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Dere05g2187 253 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2187 Dere-ChrDere05 31985344 31986105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2187 28 229 AP2-EREBP Transcription Factor Family AT5G11590 61.860 3.44e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g2187 AP2 2.9e-14 CL0081