Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2183 ATGTGGCAGGATCTCCAGAAGATGTGTAAATCCTTCTATGGCCATTTGTTTATGAACCATTTGATGGTGTTTCTTACGCTTTCTTCTTTCTTTTCGAATGTCGAAGCCCAAGACAGATCAGAGACCATGCCACAATCCCCCCAAAACTCTCAACCTACCCGTGTAAGCACAGAGATGGTAATAGTGATACTCTCCATAACGTTTACGATAACATTTGTGCTGCTTTCTTATGTAAAATTCTGTCGAACCAACCCCTTCGAGCTTCTGAACCGAGACATGCATCCCCAGAATTTTCCTCGACTTACTCAATCAGGGTGGCCTAGATTTTCTGGGATTGACAAGCAAGTAATCGAAGCACTTCCCGTCATCAAGTTTTCTTCACTCAAGGGATCAAAAGAAGGCCTAGAATGCGTTGTTTGCCTGTCGAAATTCCACGACACTGAAACTCTTAGATTGCTCCCAAAGTGCAAGCATGCTTTCCACACGAGTTGCATAGACAAGTGGCTCGAAAGTCACTCTAGCTGCCCTCTTTGCAGGAGCAGGATTGACCAAGGGGACATCAAAAGCTTCACTTCTTCCTTCAGCTCAAGCTTCCTAAGAGTGCCTTCCAATTTAACAGAGGAACCGAGTCTTGAAATCTGTGTGCAGAGGGAGCAATCCCGTCAAGCGTCATTGAGATTTAATGCTGGGAGCGGCTTGTGGAACGTGGACAAGTGCAAGAAGGAAGAACTACTCATTGATAGTGGTGGAAATTGGGAAATTCTGCCTAAGTTCAATCACAAAATAGTTATCTCGGGTTTCGTTACAAGGAGCAGGTGGAGTGATCTGAATTCGACGGATCTGCTCTCCTTAAATTCTGAGATGCTCAATGTTATGTCGAGCAGAAGGTTCTTTCCTTCGGAATCCACCAAGGGTGAATCTTCACTAAGGAGTTCAACCCTTCCCTCTACTTCCAACGAGGAACAAAATTCGTTTAAGCTACTGAATTGTGGTGGGAAGAGATCGGTGTCTGAGATACCTAACGTTCCGAGGTTTGCAGAAATCAGCAGAATCAAGAAATTAGTAGCATCTGGTGAGAACAATGGGAAGGAGGAGAGATTTTGGAGGATATGGTTGCCAATTGCGCAGCGAACCGTGCAAGGTTTTGCCAGACGAGAGAGGAGCTCAACAGAAATACAAGACAAACAATTAGCTTCAAGTGTCTGA 1206 0.4478 MWQDLQKMCKSFYGHLFMNHLMVFLTLSSFFSNVEAQDRSETMPQSPQNSQPTRVSTEMVIVILSITFTITFVLLSYVKFCRTNPFELLNRDMHPQNFPRLTQSGWPRFSGIDKQVIEALPVIKFSSLKGSKEGLECVVCLSKFHDTETLRLLPKCKHAFHTSCIDKWLESHSSCPLCRSRIDQGDIKSFTSSFSSSFLRVPSNLTEEPSLEICVQREQSRQASLRFNAGSGLWNVDKCKKEELLIDSGGNWEILPKFNHKIVISGFVTRSRWSDLNSTDLLSLNSEMLNVMSSRRFFPSESTKGESSLRSSTLPSTSNEEQNSFKLLNCGGKRSVSEIPNVPRFAEISRIKKLVASGENNGKEERFWRIWLPIAQRTVQGFARRERSSTEIQDKQLASSV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2183 401 CDD RING-H2_EL5-like 136 179 - -
Dere05g2183 401 SMART ring_2 137 178 IPR001841 -
Dere05g2183 401 FunFam RING-H2 finger protein ATL43 112 186 - -
Dere05g2183 401 SUPERFAMILY RING/U-box 115 183 - -
Dere05g2183 401 Pfam Ring finger domain 136 179 IPR001841 -
Dere05g2183 401 MobiDBLite consensus disorder prediction 299 322 - -
Dere05g2183 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 188 IPR013083 -
Dere05g2183 401 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Dere05g2183 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2183 Dere-ChrDere05 31937617 31938822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2183 56 389 C3H Transcription Factor Family AT2G20030 40.282 1.48e-67 217