LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g2167	ATGATGAAATGCCATAGCCGATCAGAGTTTCGTCGATCAGAATATCGACGTCGATATCCCCTCTCCCCTACAGCGTCATTTTCCTCTGTGGTTCAATCGAGGTACTCAGCGACGTTCTCTTGTGCTTATAGAGATGGGAAGAATGGCTGCGGCTTACAGAAATCTAATCGACGTCGATATCCCTTCTCCTCTGCAGCGTCGGTTTCCTCTGTGCGAGGTACTCAGCGTCGTTCTCTCATGCCTATGGAGAAGGGAAGAATGGTTGTGTCTTACAGAAATCTTATTGACGTCGATATCCCTTCTCCTCTGCAGTGTCGATTTCCTTTGTGGTTGCGTCAAGGTGAAACTTTAATCACACATCCAGTGTTTCAATCCCACTTTCCAACCCATTCGCCGACAATTTATACGAAGTTCATGGCACAGTTCACATGCTCTCATTACTTCCTGTGTATGATACTGTTGACTGTACACTACTCGCTATTAATTTCCTCTTTGCTTCTCTGCAACCTTCCATTCTCAAACACACTCTCTCTCCATAACCCACAGAGTGACATGGTAAAAGCAAAGAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCATTACTGAAGAGAAGGGTATGGCTGGGCACTTTCGAGACAGCAGAGGCAGCCGCTAGGGCATACGACCAAGCTGCAATCTTGATGAATGGTCGTAATGCGAAGACTAATTTCCCTGCGTCGAAGAATCAACCTGAAGACGCCACCCCTTGTGACGACGACACTAGTTCCTTATCTCCCAAGGCACTTTCAGAGCTTCTGAACACCAAGCTCAGAAAGTGTTGCAAAGCTCCATCTCCCTCTCTTACTTGTCTCAGGCTTGACGCTGACAATTCTCACATCGGGGTGTGGCAGAATGGAGGAGGACCGCGTTCTGGCTCTAACTGGGTCGTCAGAGTGGAGCTCGGCAACAAAGGGGCAAAAACTGACGCTGGTTTGTCCGTAGGGTCGATGCCGGAGAGCGGTGGAGAAGCAGGACGTGGTGTGGATGAAGAAGACAGGATCACAATGCAGATGATTGAAGAGCTTCTTAACTGGAACTATCCTTGCTCTTCAGGTGCCTCTCAGGAAAAGGAAGGAAGCCTTCCATGTCATAGTTCTTCCATCTAG	1173	0.4876	MMKCHSRSEFRRSEYRRRYPLSPTASFSSVVQSRYSATFSCAYRDGKNGCGLQKSNRRRYPFSSAASVSSVRGTQRRSLMPMEKGRMVVSYRNLIDVDIPSPLQCRFPLWLRQGETLITHPVFQSHFPTHSPTIYTKFMAQFTCSHYFLCMILLTVHYSLLISSLLLCNLPFSNTLSLHNPQSDMVKAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPASKNQPEDATPCDDDTSSLSPKALSELLNTKLRKCCKAPSPSLTCLRLDADNSHIGVWQNGGGPRSGSNWVVRVELGNKGAKTDAGLSVGSMPESGGEAGRGVDEEDRITMQMIEELLNWNYPCSSGASQEKEGSLPCHSSSI	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g2167	390	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	180	320	-	-
	Dere05g2167	390	MobiDBLite	consensus disorder prediction	330	352	-	-
	Dere05g2167	390	PRINTS	Ethylene responsive element binding protein signature	191	202	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	PRINTS	Ethylene responsive element binding protein signature	213	229	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	MobiDBLite	consensus disorder prediction	244	265	-	-
	Dere05g2167	390	ProSiteProfiles	AP2/ERF domain profile.	190	247	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	SUPERFAMILY	DNA-binding domain	190	249	IPR016177	GO:0003677
	Dere05g2167	390	Pfam	AP2 domain	190	239	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	CDD	AP2	189	249	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	SMART	rav1_2	190	253	IPR001471	GO:0003700\|GO:0006355
	Dere05g2167	390	FunFam	Ethylene-responsive transcription factor 2	189	248	-	-
	Dere05g2167	390	Gene3D	AP2/ERF domain	189	249	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g2167	Dere-ChrDere05	31833297	31834953	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g2167	185	377	AP2-EREBP Transcription Factor Family	AT5G25390	59.278	3.26e-73	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere05g2167		AP2	5.7e-12	CL0081