Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2164 ATGTACATGTCACTAACTCTTGTCCTCTGCTTCCTCTCTCGCAGTCGTCGAGGTTCCGCTCTCTCAAGTTTGTTTTGCCCAAATTGTTTTTCAGCTAACCGATTTCCTTTGCAGACTTTTCAAACCCTAACATCAATTCTTACTTTCTGTCGGCATCTTCTCGTCTCGCAGAACATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCGCCTGATTCCGTCGGCACTAAAGTCAACGGTGAAGCTGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTACTCCGGGCTATAGTCGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTCGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTGCTCTCAACTTTGCAGCAGATTGATCCTGTTGCTGGGCAAGTTTCTGCACTTGTTTTGTGTCATACAAGGGAATTGGCTTACCAGATATGTCACGAGTTCGAGAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTTTTCTATGGTGGTGTCAACATTAAAGTTCATAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGGAGAATACTAGCATTGACCAGGGATAAGGACCTCTCTTTAAAGAATGTTAGGCATTTCATTCTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATTTTCAAGATGACTCCACATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCTATGGAAATATATGTTGATGACGAGGCCAAGTTGACTCTTCATGGACTTGTGCAGCACTACATCAAATTGAAGGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTTGTCATCTTTGTAAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATCCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGTTACAAAGGATTTAAAGAGGGGCATACTAGGATTCTTGTGGCAACAGATCTGGTTGGTAGGGGAATTGACATTGAACGTGTCAACATAGTTATAAACTATGACATGCCTGATTCTGCAGATACATACTTGCACAGGGTTGGCCGAGCTGGGAGGTTTGGCACCAAGGGCCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTGCTCAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACATACATGCCATCATAG 1458 0.4348 MYMSLTLVLCFLSRSRRGSALSSLFCPNCFSANRFPLQTFQTLTSILTFCRHLLVSQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2164 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 481 IPR001650 -
Dere05g2164 485 SMART ultradead3 123 324 IPR014001 -
Dere05g2164 485 Gene3D - 100 316 IPR027417 -
Dere05g2164 485 FunFam DEAD-box ATP-dependent RNA helicase 56-like 92 310 - -
Dere05g2164 485 FunFam DEAD-box ATP-dependent RNA helicase 317 485 - -
Dere05g2164 485 CDD DEADc_DDX39 103 310 - -
Dere05g2164 485 CDD SF2_C_DEAD 321 450 - -
Dere05g2164 485 Gene3D - 317 484 IPR027417 -
Dere05g2164 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 102 459 - -
Dere05g2164 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 452 IPR027417 -
Dere05g2164 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 308 IPR014001 -
Dere05g2164 485 Pfam Helicase conserved C-terminal domain 334 441 IPR001650 -
Dere05g2164 485 Pfam DEAD/DEAH box helicase 129 294 IPR011545 GO:0003676|GO:0005524
Dere05g2164 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Dere05g2164 485 SMART helicmild6 360 441 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2164 Dere-ChrDere05 31813538 31821604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2164 59 485 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 759