Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2161 ATGATAGTGTTTCGTTTCTGTATCCTAGCGAATGGTCATGGGCAATGCAAACTTGTGTTACTGTTACTGATCTTGAATCTTGATTTTACCATTTATAGGTTAAAGCGTTACAAAGGATTTAAAGAGGGGCATACTAGGATTCTTGTGGCAACAGATCTGGTTGGTAGGGGAATTGACATTGAACGTGTCAACATAGTTATAAACTATGACATACCTGATTCTGCAGATACATACTTGCACAGGGTTCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACATACGTGTGGACCCCTCACCCTGTTTTAGAGACTGGTCTCGAGTACGAAGTAGGGCTTTCTGAATTGAGATGTCAGAGGTTATATCTTTCATTTTTTCGTAAGCTATGGAGGCAAATTGCCATTTTGAAAGTGGAATACATGGTGATGACTGCATTGCCATCAAAGGTAACTCATACTTGGTCAACATTTCCAAAGTTACCCAGTCATGGCATCAGGAGGAAAGTAAATTGCATGATTGAGCAGGGAGGAAGGGGATATGCTAGGGCAATCTCCTTCCGACATATTAGAGTAAAGAATACCATAAACCCAGTTATAATTGATATGCGTTATATGGGCACTCCAGAACAGGGGCAAGCAATGAAAGTGAGGGACATAAAGTTTAGTGATATTAGAAGGACGTATGTGGATGAGAAAGCGATCATATTGGATTGTGCAGAGATAGGGTGTACTGACATTAAATTGAATCAGATTAGAATAACTTCTGTTGATCCTAAGAAGCCAGCTTCTGCAATATGCAAGCATGCTCATGGAACTACTCGACATACTTCACCTCCTATGTCTTGTCTCTGCATTTTGAAAGCATGGGAAGCATTTTGTGAAGCAAGTGAAGTTGCACCCACATTTGTGGAACCACCTGGTTATACTTTCTTATTGCATCAAACCAATTTTAGGGATCCCTACCACTCTAACAAACCCCATCTTTGGGATTTGGGACCTAGAGATGCATGGGTAGCATGTTCCAAAATGTGGTTAAGTATAGCAGAGGTTACCAGTTTGACCGTTGATGAATTTGGAAAACTTGATGGTCAAGGTCAAACTTGGTGGTCAAAGTCTTCTACCCAAGGGCTTGAATTCTATCACTGTGATGGGCTTCGAGTAAGTGGGCTGACCCACACTAATGGGTCTGGGCAACATGTAAAAGTGGTCCAAAGTAAAGATGTAACACTCTCACATCTTACCATAAACTCGCCTAAAGACAGTCAAGATACTGATGGAATTGACGTCGAAAATTCAACCCACGTTATGATTGCATTGCCATTAAAGGAGGCTCATTTTTCATCAACATTACCGAAATCACATGTGGACCTGGTCACTGCATTAGGGTCAGGGGATATGCTAGGGCAATCTCCTTCTGACATATCCGACTAA 1452 0.4146 MIVFRFCILANGHGQCKLVLLLLILNLDFTIYRLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDIPDSADTYLHRVQSRFEVDIKQLPEQIDTSTYVWTPHPVLETGLEYEVGLSELRCQRLYLSFFRKLWRQIAILKVEYMVMTALPSKVTHTWSTFPKLPSHGIRRKVNCMIEQGGRGYARAISFRHIRVKNTINPVIIDMRYMGTPEQGQAMKVRDIKFSDIRRTYVDEKAIILDCAEIGCTDIKLNQIRITSVDPKKPASAICKHAHGTTRHTSPPMSCLCILKAWEAFCEASEVAPTFVEPPGYTFLLHQTNFRDPYHSNKPHLWDLGPRDAWVACSKMWLSIAEVTSLTVDEFGKLDGQGQTWWSKSSTQGLEFYHCDGLRVSGLTHTNGSGQHVKVVQSKDVTLSHLTINSPKDSQDTDGIDVENSTHVMIALPLKEAHFSSTLPKSHVDLVTALGSGDMLGQSPSDISD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2161 483 Gene3D - 30 82 IPR027417 -
Dere05g2161 483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 149 IPR001650 -
Dere05g2161 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 82 IPR027417 -
Dere05g2161 483 Gene3D - 290 445 IPR012334 -
Dere05g2161 483 Pfam Helicase conserved C-terminal domain 33 82 IPR001650 -
Dere05g2161 483 SUPERFAMILY Pectin lyase-like 292 444 IPR011050 -
Dere05g2161 483 PANTHER - 171 278 - -
Dere05g2161 483 Gene3D - 155 289 IPR012334 -
Dere05g2161 483 Pfam Glycosyl hydrolases family 28 182 277 IPR000743 GO:0004650|GO:0005975
Dere05g2161 483 Pfam Glycosyl hydrolases family 28 349 445 IPR000743 GO:0004650|GO:0005975
Dere05g2161 483 SUPERFAMILY Pectin lyase-like 177 290 IPR011050 -
Dere05g2161 483 SMART helicmild6 16 87 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2161 Dere-ChrDere05 31767751 31788503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2161 33 103 Eukaryotic Initiation Factors Gene Family AT5G11170 64.646 1.09e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2161 05 31767751 31788503 Dere04g0566 04 5642307 5647226 CCT
Dere05g2161 05 31767751 31788503 Dere05g2161 05 31767751 31788503 ECH
Dere04g0566 04 5642307 5647226 Dere05g2161 05 31767751 31788503 ECH