Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2153 ATGGCTTTTGCGGTTTCCCCATCGATACGCACAAAATCCATGGCCGTTCAATGTTTATCATCCACTCAAAGTGAGCGTTTCACTGTGGGTAGTCTGAGTTTGCCACGTAAACTTCTATCCTTTTCTGTTCTCGTATCCTCTCGTGGTCGACACTCCAGCTCTGCAATTGCCGCCGCATCTTCTTCTCGCAAAAAGAAAAAGAAGCAAAATTTGTCTCAAAATCATGTTAAGGAGGAGGATGAAGGGGAGGATGCTTTCGAGCTTCTCTTCAAACAACTGGAAGAAGATCTCAAAAATGATGATATATCCTTGGATAATAGCGATGATGAAATAACTGAGGAAGACCTTGCCATGTTTGAACGTGAGTTAGAAAATGCACTGGGGGAAGATGATGCAGAAATGTTAAACTCAGTCTTAAATGATACAGAAACTGATAATGATGTATATAATAAAGAAGAAGAAAAAGAAGATGATGATGGAGAAGATGGAAAGTTAGTGAACCTTAGAAGTTGGCAACTACGGAAATTAGCTAAGGCTCTAAAGGCTGGTCGTCGTAAAACAAGTATCAAAAGTCTTGCAGCCGAGCTTTGTCTTGATAGGGCTATTGTTCTTGAGTTGCTACGTGACCCTCCTCCAAATCTTTTAATGATGAGTCTGTCATTACCTGATGAGCCCACAGCAACAGTACTAGAGCCTGAAACAAAACCTATGGAGCCTGTTCATGAAGAAATACGGACAGATCATGTGGAGCCTGGATTGAAGTCTAAAATACCTGTTCACGTCATGCAACGTAGATGGTCTGCTCAGAAGAGATTGAAAAGGGTACATGTTGACACTCTGGAAAAAATTTATAAGAGAACAAAGCGGCCCACTAATGCAATGATCAGTAGTATCGTGCACGTGACCAACCTTCCTCGCAGGAGAGTTGTTAAATGGTTTGAAGATAAACGTGCTGAGGATTGTGTTCCAGAGGATCGCGGTCCATACCAGCGATGGATGGTTTTGAAGCGAAGGTCGTGTTGCAAGCTAGATCTGATCTATGGTTCACGAAGGGAAGCCATTGTCTTGTGGGTTTTTGGGATCAGAAAGGCTAGGATGGGGCTTCCGGATTGTTCCTTTTACATGAATTGCACCATGATAATGGATACCCCAGAAAAGAAAGAGACAGGTCAGACAGCAACAAGTTCCATTGCTGCAAGCTCTCTTCCTTCAAGCAGTGAAAAATCCTCAAGCTCCGCTCCCCAACTTGAAGCGAAAGAAGGACCGGAGAGCGATGAGGAGATCCTGAGGGTGCCGGAGATGGGCGGTGAATCCGCCGAAACGTCAGCTTCCCGGCCAGAGACCCGTGGAGAGGGGGTTCAGGGGACAGTGGAGGGTCAGAGGAAGAGAGGGAGAAGCCCTGCTGACAAAGAAACGAAGCGCCTCAAGAGGTTGCTGAGGAATAGAGTTTCGGCTCAGCAAGCGAGGGAGAGAAAAAAGGCATACTTGATTGACTTGGAAACAAGGGTTAACGACTTGGAGAAGAAGAATTCGGAGCTCGAAGAGAAATTGTCCACTTTGCAGAATGAGAATCAGATGCTAAGACATATATTGAAGAACACAACTGCAAGCAGAAGAGGAGGCAGCGGTGAAGGAACTTTATGA 1644 0.4501 MAFAVSPSIRTKSMAVQCLSSTQSERFTVGSLSLPRKLLSFSVLVSSRGRHSSSAIAAASSSRKKKKKQNLSQNHVKEEDEGEDAFELLFKQLEEDLKNDDISLDNSDDEITEEDLAMFERELENALGEDDAEMLNSVLNDTETDNDVYNKEEEKEDDDGEDGKLVNLRSWQLRKLAKALKAGRRKTSIKSLAAELCLDRAIVLELLRDPPPNLLMMSLSLPDEPTATVLEPETKPMEPVHEEIRTDHVEPGLKSKIPVHVMQRRWSAQKRLKRVHVDTLEKIYKRTKRPTNAMISSIVHVTNLPRRRVVKWFEDKRAEDCVPEDRGPYQRWMVLKRRSCCKLDLIYGSRREAIVLWVFGIRKARMGLPDCSFYMNCTMIMDTPEKKETGQTATSSIAASSLPSSSEKSSSSAPQLEAKEGPESDEEILRVPEMGGESAETSASRPETRGEGVQGTVEGQRKRGRSPADKETKRLKRLLRNRVSAQQARERKKAYLIDLETRVNDLEKKNSELEEKLSTLQNENQMLRHILKNTTASRRGGSGEGTL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2153 547 MobiDBLite consensus disorder prediction 419 433 - -
Dere05g2153 547 Pfam bZIP transcription factor 470 530 IPR004827 GO:0003700|GO:0006355
Dere05g2153 547 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 471 534 IPR004827 GO:0003700|GO:0006355
Dere05g2153 547 MobiDBLite consensus disorder prediction 55 80 - -
Dere05g2153 547 Gene3D Single helix bin 492 533 - -
Dere05g2153 547 SMART brlzneu 469 533 IPR004827 GO:0003700|GO:0006355
Dere05g2153 547 SMART HOX_1 270 327 IPR001356 GO:0003677
Dere05g2153 547 MobiDBLite consensus disorder prediction 140 163 - -
Dere05g2153 547 MobiDBLite consensus disorder prediction 456 492 - -
Dere05g2153 547 MobiDBLite consensus disorder prediction 386 492 - -
Dere05g2153 547 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 392 541 IPR044280 GO:0000981|GO:0045944
Dere05g2153 547 Gene3D - 265 324 - -
Dere05g2153 547 Pfam Homeodomain 273 318 IPR001356 GO:0003677
Dere05g2153 547 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 476 491 IPR004827 GO:0003700|GO:0006355
Dere05g2153 547 FunFam Transcription factor HY5 492 533 - -
Dere05g2153 547 SUPERFAMILY Homeodomain-like 266 320 IPR009057 -
Dere05g2153 547 CDD bZIP_HY5-like 474 525 - -
Dere05g2153 547 SUPERFAMILY Leucine zipper domain 473 531 IPR046347 GO:0003700|GO:0006355
Dere05g2153 547 Coils Coil 468 530 - -
Dere05g2153 547 CDD homeodomain 266 318 IPR001356 GO:0003677
Dere05g2153 547 ProSiteProfiles 'Homeobox' domain profile. 263 319 IPR001356 GO:0003677
Dere05g2153 547 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2153 Dere-ChrDere05 31713781 31722944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2153 413 530 bZIP Transcription Factor Family AT5G11260 73.984 4.62e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere05g2153 bZIP_1 4.2e-13 CL0018