Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2146 ATGGTAAAGAAGGCTGTGGCAAGCTGTGAAAAAGCAAAAAGAAAGAGGAGGAAGAGTACTGATTCGATTCTCTCATTGGGAAATGCTTCCATGCATATGATCAAACCCATGAAAAAGAAATTAAGTGGAAAATTTAACATTTTCCGTCACTTTCAGTCGCAGGAAGGCACAAGAGAAAAAAGATGCAGAAAGCGGAGTCTAGGGTTCATAAGGGATGGTGAATTCTTGATCATGGATTCTCCCGATGCTGCAAAGTACAACTCCATTTCTACCGCCACTGCCGATACTGTTGCTTCTTCTGATTCTCCTCCAGTTCAAGAGTCCCCTTTTTTCCGCTACGTAAACAATTTATCTCCAATAAAGTCTGTTAAGGCTTCTCGTGTGGCTCATGATTTCCTTGGACTCAATTCTCCACCTATCGTCTTCACATCACCACGTATTAATCCTCATCGTGGATCACATTTCTTGGAGAGGCCACAATGTTCTCAATCAGCCACTGTAGAATTTTCTCAAACTGACAATGGAAGCAAGAGCTATGTTGATAACCCTGTCAATACCGATAAATCAAGTTCTTTACTGCCAGGGAAGTTTGTAACTGATAATCGGAAGGATTTTGATAGCAAGAATAATGCAAATATTCAACACTGCAGTTCTTCACTGTGTGTTGAATCTGTATATGAATACTTGGCTGATCCTGCAGATATTGCTTGTATCATTCCTGGGCATTCAGTCAACCCAGATGTGAAACGATCTAATGACACTGTTGAACCATCATTAAATGACTTGATTCACTCAAAGGAAACCGTATTAACATTTGATGATAAGAATGATCCTGGTGACATGGTGGAAGGGCCTTTGCCTTTGTCAGAGGAATCTAAAAACAGTTATCAAGAAAAGCCGGCATTTGTTAATGAAACAGGAAAAGTAGAAGGGGAGAAAAAACATGTTGAGTGGCCGTCTCAAGAATGTACTTTGTCTGCTGACTTTGTTCTTGAGAAACAACGTTGTGATGATTCACTTGTCCAGTGTGCAGGAAATGAAATGCAGGGCCATCGTGATTGTACGTCTCAGTCAATGCTTGAGCGTTTGCAGGATGTCAAGGAATCTGAAGATTGTAGCGAGATGGGGCTAACCACTTATGTGAGTGAACAGAACATGTCACAGGACAGCTCCAAGGCCAGTCAAAAGCACCGAGGCTTGCGTAGACGTTGCCTTCAGTTTGAGGAGGCTGCATCAAATGCTTTTGGTAGATTAAACAGCTCCCCTCATCCTACCCATGTTCCGGATGATTCAATACCATCAGCTACCACCTCAGATTCAGAAGATTTAAAAGCTTCTCAAGTGACATTAAATGCAACTTTAGGTGAAAAGAGAATGGTCAAGCTGTCCAAACCTATCAGTTCCTTATTTTCACCACGTTCTAGCGGAAGCTTCCCTTTGACAAGTTCCAAGCCGTCAGGTATTGGGTTGCATTTAAATAGCATTGTAAATGCTATGCCCCATGGTCGTGCTGCACTTACAGGTATGAGACTAGCGGAGGGTTGTACTGGTTTACAAGGTGTGAAGTCAGTGACTCCACTAAGCTGCCGTAATGTGGAGGACATAAAGAGGGGCTTAATTTCATCAAACATGGACGGGCAATCATCAGTTGATAATGAGGGTGAGGAGTACGAAAGGAATGCTTCAATAGCTGCAGGTTCTCTCTCCTCCGAGTCTCCTAGCTCTATAGAACCGCCAAATTTGTCAATTCACGTTGAGCATCCTGCAAGTGTCCATGATAAGAGTAAATTAAGCTCTGTAGGTGATGAAAATTTTGAGGATTCCAACCAAACAAGCCCCAAGAAGAAAAAGAAGAGAACATCAAACACCACTGATGATGATAGCTGTAAAAGATGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCCGGATTATATTGTACTGAGCCTTGTGCTTGCCAAGGCTGCTTTAATAGACCTGAATATCAAGATTTGGTTTTAGAGACAAGGAAACAAATAGAATCCCGTAACCCACTTGCATTTGCCCCCAAGATTGTACAGCGGGCTACCGATTTTCCATCAAATAATGTGGAGGATACCAGTTTAACGACACCTTCTTCAGCAAGACATAAAAGAGGTTGCAATTGCAAAAAGTCAATGTGTCTGAAAAAATATTGTGAATGCTATCAGGCTAATGTCGGATGCTCCGGTGGATGTCGATGTGAGGGATGTAAGAACGTCTATGGCAGGAAAGATTACGTTGCCATGGAACATGCTTTGAGTGAAGAAAGAACAAGAAACAGAGGTGAAGGAGCAAATAGCACGCTTCAGAAAAAGCTGGAAATGGTGGCACAGCAGGCAGATTTGGTACACGGAGAGTTGTATGATCTGCAGGGCCTTTCTCCTCTAACACCGTCTTTGCAATGCTCAGACCAAGGGAAGCCAGCTGCAAATTTCCGAGCTCCTGGAAAGTACCTTCCAGCCCCTGATATGTTAAGAAATGTCTCTTATGATTGGCAACAGAACGACTTGGAATTAATGGATCAATCATCACCAAGATGTAATTCACTTGGCAACGAGCATCAGCTCACTCTTTCTAATCCTCAGTCAATGTCTAGTGCTTCATTCTCATCTAAAACAAAGGATCAGACACATATTACACATGTTCTATCTGGCGGTTCCCTTCGGTCGCGTAGTTCCCCAATCACCCCAATTACTAAATTAGGTGAAACTAGATCTCAACAGTGTCTTGAATCGGATAGCAGACTTTATGACATACTGGAAGATGAAACTCCTGATATATTGAAGGAAGCTTCAACTCCCATAAAGTCTGTCAAAGCAAGTTCCCCTAAACAGAAGCGAGTTTCTCCCCCTCAGGGTCATCTGCGTGAACTTTGTTCAAGCTCTTCGGGAGGCTTGAGAAGTGGCAGGAAATTTATATTGAAAGCTGTGCCTTCTTTCCCACCATTGACCCCTTGTATTGTTTCCAAAGGCAATGATCATGAGACGTCAGGTACTAGTACGAGCAAGCAAGTGACGGACAATATCGAAAGCTGA 3075 0.425 MVKKAVASCEKAKRKRRKSTDSILSLGNASMHMIKPMKKKLSGKFNIFRHFQSQEGTREKRCRKRSLGFIRDGEFLIMDSPDAAKYNSISTATADTVASSDSPPVQESPFFRYVNNLSPIKSVKASRVAHDFLGLNSPPIVFTSPRINPHRGSHFLERPQCSQSATVEFSQTDNGSKSYVDNPVNTDKSSSLLPGKFVTDNRKDFDSKNNANIQHCSSSLCVESVYEYLADPADIACIIPGHSVNPDVKRSNDTVEPSLNDLIHSKETVLTFDDKNDPGDMVEGPLPLSEESKNSYQEKPAFVNETGKVEGEKKHVEWPSQECTLSADFVLEKQRCDDSLVQCAGNEMQGHRDCTSQSMLERLQDVKESEDCSEMGLTTYVSEQNMSQDSSKASQKHRGLRRRCLQFEEAASNAFGRLNSSPHPTHVPDDSIPSATTSDSEDLKASQVTLNATLGEKRMVKLSKPISSLFSPRSSGSFPLTSSKPSGIGLHLNSIVNAMPHGRAALTGMRLAEGCTGLQGVKSVTPLSCRNVEDIKRGLISSNMDGQSSVDNEGEEYERNASIAAGSLSSESPSSIEPPNLSIHVEHPASVHDKSKLSSVGDENFEDSNQTSPKKKKKRTSNTTDDDSCKRCNCKKSKCLKLYCDCFAAGLYCTEPCACQGCFNRPEYQDLVLETRKQIESRNPLAFAPKIVQRATDFPSNNVEDTSLTTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSGGCRCEGCKNVYGRKDYVAMEHALSEERTRNRGEGANSTLQKKLEMVAQQADLVHGELYDLQGLSPLTPSLQCSDQGKPAANFRAPGKYLPAPDMLRNVSYDWQQNDLELMDQSSPRCNSLGNEHQLTLSNPQSMSSASFSSKTKDQTHITHVLSGGSLRSRSSPITPITKLGETRSQQCLESDSRLYDILEDETPDILKEASTPIKSVKASSPKQKRVSPPQGHLRELCSSSSGGLRSGRKFILKAVPSFPPLTPCIVSKGNDHETSGTSTSKQVTDNIES 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2146 1024 SMART CXC_2 715 756 IPR033467 -
Dere05g2146 1024 SMART CXC_2 627 668 IPR033467 -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 166 185 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 1 20 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 540 630 - -
Dere05g2146 1024 ProSiteProfiles CRC domain profile. 628 755 IPR005172 -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 608 630 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 563 579 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 587 601 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 415 443 - -
Dere05g2146 1024 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 630 665 IPR005172 -
Dere05g2146 1024 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 718 752 IPR005172 -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 997 1024 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 944 980 - -
Dere05g2146 1024 MobiDBLite consensus disorder prediction 1003 1024 - -
Dere05g2146 1024 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 78 1003 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2146 Dere-ChrDere05 31628024 31635005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2146 543 793 CPP Transcription Factor Family AT3G22760 48.846 5.28e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dere05g2146 TCR 6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2146 05 31628024 31635005 Dere05g2146 05 31628024 31635005 ECH