Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2122 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATATATGATTACCTAGTCAAGAGAGATTTGAAGGCTTCCGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTACATCGAGACGCAGTTAATCAAGGGAAGGGAGCAGCAACAACAGCAGCCACAACCCCAGCAGTCACAGCATCAACAACAACAGCAACAGCAGCATATGCAGATGCAACATCTCCTGTTACAGAGGCATACACAACAGCAGCAACAGCAACAGCAGCAACAACAACTGCAGCCCCAGCAACAGCAACCGCCATCACAACAGCAAAGAAGGGATGGGGCTCATCTCTTAAATGGCAGCACAAATGGGTTGGTTGAGAACCCACTCATGGCGCATAACCCTGGTACTGCAAATGCGCTAGCCACAAAGATGTATGAGGAAAGGTTAAAACTGCCTCTTCATAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCAATGTTGAAGTCAGGGGCAGCTTCTGGCCAGCCTTCAGGGCAAGTGTTGCATGGTGCTGCTGGTGGGATGCCTCAACAAGTTCAAGCTCGTAGTCAGCCATTACAAGGGTCTACCCTGGATGTAAAGAGTGAGATAAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGGTCAAATCAAGGTAGCAACAATTTGACTCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGATCTGGTCTTCTCCAGCCACAAAAGCCTTTTATACAGGCTCCTCAGCCCTTTCATCAACTTCAAATGTTGACGCCACAGCATCAGCAGCAGCTTATGCTTGCGCAACCAAATCTGGCACCGGCAGCTGCCAATGATGAAAGGGGACGACTTAGAATGCTTTTGAATAGGAATAAGGATGGTCTTCCAAACCCTGTTGGTGATGTGGTACCAAATGTTGGGTCGCCACTTCAAGCTGGCAGCCCTCTTTTGCCTCGTGGAGATACCGACATGCTATTGAAGTTAAAATTGGCTCAGTTACATCAGCAACATCAACAGCAGAATAGCAATCCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAAACTTCAAATCTTAACCTGCATCAGCAAGATAAAATGGGAGGTGGTGGTAGTGTCACAGCAGACGGGAGCATATCAAACTCTTTTAGAGGAAATGAACAGGCTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCCGTAACTTCTTCTGGTCCTGCCAACAGCTCAGGAACGGCAAATACGGCAGGTCTGTCTCCTAGTTCAGCACCCTCAACCCCCTCAACTCATACACCTGGAGATGTGATATCGATGCCTGCTTTACCGAGTGGTGGTTCTTCGAAGCCTCTAATAATGTTTGGCACTGATGGCACTGGAACTCTTGCATCACCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTTGAAGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATGCTGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCCCGTTTGCTGAAGTAAATTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCACCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTCAAGCCAAAAGCTACCCTTGAAGAACATTCATCTTTGATAACTGATGTCCGTTTCAGCCCAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACAGTCAGGGTTTGGGATGTTGACAATCCTGGGTATACGCTTCGGACCTTTACTGGACATTCTGCATCCGTCATGTCACTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCTTGTGATGGTGATGGTGAAATACGGTATTGGAGCATAAATAATGGAAGCTGTACTAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGATTTCAACCTTGCTTAGGGAGGTACCTTGCTGCTGCTGCAGAGAATGTTGTATCTATACTTGATGTGGAGACACAAACATGCCGATATTCATTACAGGGACACACAAAGCCGATACATTCTGTGTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACTGGAAGTGAAGGGGAATGTGTTCATGAGCTAAGCTGTAACGGGAACAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGTTGCTGGTCATTGGCTGCTACCAGTCGATGGAGCTTTGGAACATGTCTGAGAACAAGACAGTGACCCGGTCAGCTCATGAAGGATTAATTGCTGCATTGGCAGTCTCAACTGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTTAAGCTCTGGAAGTAA 2634 0.4617 MSQTNWEADKMLDVYIYDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKGREQQQQQPQPQQSQHQQQQQQQHMQMQHLLLQRHTQQQQQQQQQQQLQPQQQQPPSQQQRRDGAHLLNGSTNGLVENPLMAHNPGTANALATKMYEERLKLPLHRDSLDDAAMKQRFGENMGQLLDPSHASMLKSGAASGQPSGQVLHGAAGGMPQQVQARSQPLQGSTLDVKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKPFIQAPQPFHQLQMLTPQHQQQLMLAQPNLAPAAANDERGRLRMLLNRNKDGLPNPVGDVVPNVGSPLQAGSPLLPRGDTDMLLKLKLAQLHQQHQQQNSNPQQQQLQQHALSNQQSQTSNLNLHQQDKMGGGGSVTADGSISNSFRGNEQASKSQTGRKRKQPVTSSGPANSSGTANTAGLSPSSAPSTPSTHTPGDVISMPALPSGGSSKPLIMFGTDGTGTLASPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDAVGRCMDVSKGFPFAEVNSVRASTSKVVCCHFSPDGKLLASGGHDKKAVLWYTDSLKPKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPCLGRYLAAAAENVVSILDVETQTCRYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSMELWNMSENKTVTRSAHEGLIAALAVSTVTGLVASASHDKFVKLWK 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2122 877 MobiDBLite consensus disorder prediction 219 253 - -
Dere05g2122 877 MobiDBLite consensus disorder prediction 402 442 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 678 716 - -
Dere05g2122 877 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 877 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 845 877 IPR001680 GO:0005515
Dere05g2122 877 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Dere05g2122 877 FunFam Transcriptional corepressor LEUNIG 724 877 - -
Dere05g2122 877 FunFam Transcriptional corepressor LEUNIG 572 723 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 634 IPR001680 GO:0005515
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 845 877 - -
Dere05g2122 877 Gene3D - 572 724 IPR015943 GO:0005515
Dere05g2122 877 Gene3D - 725 877 IPR015943 GO:0005515
Dere05g2122 877 MobiDBLite consensus disorder prediction 85 163 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 635 670 - -
Dere05g2122 877 MobiDBLite consensus disorder prediction 85 167 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 760 800 IPR001680 GO:0005515
Dere05g2122 877 CDD WD40 589 877 - -
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 635 670 IPR001680 GO:0005515
Dere05g2122 877 Pfam LisH 10 36 IPR006594 GO:0005515
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 593 624 - -
Dere05g2122 877 Pfam WD domain, G-beta repeat 630 667 IPR001680 GO:0005515
Dere05g2122 877 Pfam WD domain, G-beta repeat 755 790 IPR001680 GO:0005515
Dere05g2122 877 Pfam WD domain, G-beta repeat 674 711 IPR001680 GO:0005515
Dere05g2122 877 Pfam WD domain, G-beta repeat 594 624 IPR001680 GO:0005515
Dere05g2122 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 678 720 IPR001680 GO:0005515
Dere05g2122 877 SMART Lish 8 40 IPR006594 GO:0005515
Dere05g2122 877 MobiDBLite consensus disorder prediction 402 519 - -
Dere05g2122 877 SUPERFAMILY WD40 repeat-like 586 877 IPR036322 GO:0005515
Dere05g2122 877 SMART WD40_4 714 750 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 586 625 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 838 877 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 797 836 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 628 667 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 753 791 IPR001680 GO:0005515
Dere05g2122 877 SMART WD40_4 671 711 IPR001680 GO:0005515
Dere05g2122 877 MobiDBLite consensus disorder prediction 449 509 - -
Dere05g2122 877 ProSitePatterns Trp-Asp (WD) repeats signature. 654 668 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2122 Dere-ChrDere05 31326074 31337305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2122 672 876 Miscellaneous Gene Families AT5G08390 25.238 3.95e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dere05g2122 WD40 3.6e-05 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2122 05 31326074 31337305 Dere04g0603 04 6024307 6034687 CCT