Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2117 ATGATTTGCCACAATAGACAGTTATTCAATTCGCAACAACATTTATTCCCACAATAGATCGTGCTCTGTTCTGCTTTCCTCTCACTCCTCCTGTGTGTGAGTGTGGAGTACGAGCAGCTAAGCTATGCAGAGCGAGATGGGTATCCGATAGCCGTGCTGAGAATGGCACAGCATAACAATGGGAATAACAGTTCGAGCCAACAGTTAGTGAAACCAGTCTTCCATGACTTTATGGGCATGAAACCCACTGATTCGCCTGTCGTTTTGGCTCCTAAAACCGCTGATGGAAGGCTGTCGGAGGCGTCGCCGTCGTCGACATCGGTCTCTGTTGGCGTCTCGTCTGGTGGTGCCCGTGGCCCCCTCTCCACCACCTCTGATATCGCTTCCGAAAGACAGTTAGGAAATCACCTCGAGGGAGTACCATTCTATTGCCCGAGGAGTGATCTTTCTGGCACTGAGATGAGTAACAGAATAGTAGGAAGCAAGAGAAGTAATTCTGATTCCACTTTTATGAGCTCCTCCAAAGATGCCTTCCAAATGGTTCCCGACTCTCTTCAAAACTCACATTTAATGAAGATAATCCGGAATGCAGCTGGAGAGGAGAGGCATAGAAGGTCTAATGATGATAATGTGTTTCTTGGTATGCAGTCAAAGAAGCCAACTTCTGATTCTCATATGTATCAGCCTCCCACTGGCACTAAGATTGATATTAATAAATGGGAGCGATCTATTCTTATGAGCGCTGGCCCTTCCATGCAACATCCATCACGTGGGGGTCAATTGGCACCTTTTGTGCACCAGATACCTTCTAACAAGATCAGGGATACTAATGCTGGTCCTTCATTTATTTCTCGATCAGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGGATTTTGAGTTCTATAAACACTACCACTGCTGCTTCTGAGAAGACTGTGTCTGCGGTACTCCTGGGTGGAAGCAGGCCAAAGCCAATGACTGGTATAATAGACCCAGAGTCTTCTGCACCACCAAGTCGACATGGATTAGCATCTGCCAGCTGTCAGATGACTATTTTTTATGGAGGTCAAGCTCATGTGTTTGATGACGTCCGTCCTAATAAGGCAGAAGTTATAATGGCTTTAGCGGGTTCAAATGGTGGATGCTGGTCCACAACATACTCCCCCAAATCTGCTGTGAAGCTCACTAATGATAGTAACATGCTCTGTGGAGATAGCGAAACAGGCATTGTGAGCAACATTACACTCCCACAGGATCTTAATGGAAGATTAAATTTCACTGGCACTTCTAGTCTTGCCATTAAATCTGGTGATCGAGTGTCTACACAAGCAGGGGCACGTCAGGAAAGCATAGTAGCTAATGAAGATACGAGAAATTTAATTAAAGCAGCAGGTCCCAGTTCTGAGGACAAAAGGGTGCAATGA 1434 0.4609 MICHNRQLFNSQQHLFPQXIVLCSAFLSLLLCVSVEYEQLSYAERDGYPIAVLRMAQHNNGNNSSSQQLVKPVFHDFMGMKPTDSPVVLAPKTADGRLSEASPSSTSVSVGVSSGGARGPLSTTSDIASERQLGNHLEGVPFYCPRSDLSGTEMSNRIVGSKRSNSDSTFMSSSKDAFQMVPDSLQNSHLMKIIRNAAGEERHRRSNDDNVFLGMQSKKPTSDSHMYQPPTGTKIDINKWERSILMSAGPSMQHPSRGGQLAPFVHQIPSNKIRDTNAGPSFISRSAADEGSRTGIKGPGILSSINTTTAASEKTVSAVLLGGSRPKPMTGIIDPESSAPPSRHGLASASCQMTIFYGGQAHVFDDVRPNKAEVIMALAGSNGGCWSTTYSPKSAVKLTNDSNMLCGDSETGIVSNITLPQDLNGRLNFTGTSSLAIKSGDRVSTQAGARQESIVANEDTRNLIKAAGPSSEDKRVQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2117 477 MobiDBLite consensus disorder prediction 448 477 - -
Dere05g2117 477 MobiDBLite consensus disorder prediction 271 295 - -
Dere05g2117 477 MobiDBLite consensus disorder prediction 211 233 - -
Dere05g2117 477 SMART tify_2 346 381 IPR010399 -
Dere05g2117 477 MobiDBLite consensus disorder prediction 95 129 - -
Dere05g2117 477 MobiDBLite consensus disorder prediction 98 129 - -
Dere05g2117 477 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 150 415 IPR040390 -
Dere05g2117 477 ProSiteProfiles Tify domain profile. 346 381 IPR010399 -
Dere05g2117 477 MobiDBLite consensus disorder prediction 211 231 - -
Dere05g2117 477 Pfam tify domain 348 380 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2117 Dere-ChrDere05 31269546 31275146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2117 55 379 Tify Gene Family AT4G32570 37.168 4.82e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere05g2117 tify 1.8e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2117 05 31269546 31275146 Dere04g0605 04 6042942 6047083 CCT