Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2116 ATGAAACGACATGTCGTTTGGATTCAGGGCTTTACGAGAGCGTTGGCGTTGTTCCCTTTCGGCAATTGCCCCTTCAACGACCCAAAAATGCTTTTCCATAACCCTCGACATGTACTCTTCTCAGTTCGTCTTCTGCTGCTAAGGCCAAAGCTTGTTCCATTCTTCTCCTCCTCCGAACACTCATGGCTATCTATGCGGGGTAAGGATAGGCTTCTCATCGATTGGCCCTCTCTACCGATCCCCGAACGCATTCCGAACTCTAACCCCTCATCGAATGCGGACTCGAACTTCTCACTGGATGACTTCTCTACCATTGTGAATCTCTTTATCGATTCTTCCATCTCTCCGGGTCCAGCACTGGATACTGCACTCGATCGGGCCGGGATTGAACCAGACCCCACTCTACTGCAAGCCATATTCGATCATTTCGACTCTTCCCCCAAGTTACTACACTCGTTGTTTCTTTGGGCTCAGAAGCGACCTGGGTTCAGTGCCAGCGTGGGGCTCTTCAACTCCATGATCAACGTTCTTGCCAAATCAAGGGAGTTTGACTCTGCTTGGATTTTGCTTCTTGATCGGATTGACAAAAATGACGAAGTCATCTTCGTTACCAAAGATACCTTTGCTATTATGATCAGACGGTATGCACTTGCAGGCATGCCACAACCTGCAATACGGACGTTTGAGTATGCAAGAAATTTGAAGTCAAGTTTGGATCCCGATTCAGAAATGAGTTTATATGAGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCAGAGCGGCTTCTGAGTATTTCCTTCAGAGAAAGAGGATGGACCCATGTTGGGTTCCATCAATTCGGGTTTATAATATTATGTTGAATGGATGGTTTCGATCAAGGAACCTCAAACATGCTGAGAGATTTTGGGCAGCCATGAAGAAGGAGAATGTAAGACCAAGTGTTGTGACATACGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCATATTGAAAAGGCACTTGAATTGGTGGGTGACATGACCAAAGAAGGAATTGAAGCAAATGCAATTGTGTATAATCCAATAATCGATGCATTGGCAGAGGCTGGGAGATTTAAAGAGGCTTTGGGGATGCTGGAACGCTTTCTTGTTTTAGAAACAGGACCAACTAACTCAACATACAATTCTTTGGTGAAGGGTTTTTGTAAGGCAGGAGATCTAGTTGGTGCAAGTAAGATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCAAGTCCCACCACCTATAACTACTTCTTTAGGCATTTTTCAAGATATGGGAAAGTCGAGGAGGGTATGAACCTTTACACCAAGATGATTGAATCTGGTTATAGCCCTGATCGACTTACTTACCATCTTCTAGTGAAGATGCTATGTGAAGAGGAGAGATTGAACTTGGCAGTTCAAGTCAGTAAGGAAATGAGGTCTAAGGGATATGACGTGGACCTAGCCACGAGCACTATGTTGGTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAGTTTGAGAACATGATACGAAGGGGTATTGTTCCTCAGTATCTCACATTTCAGAGACTGAATAATGAATTGAAGAAACAAGGGATGATTGAAATGGCACGAAAACTATGCAGCATGATGTCTTCTGTCCCCCATTCTACTAATTTGCCAAATACATATGTTGAAGAGATAGATGAAGCACATGCTCGGAGACGATCTATAATGCAGAAAGCCAAAGCGTTTTCTGATATGCTGAAAAGCTGCAAGGACCCTAGAGAACTTGCCAAATATAGATGTTCATCAGAAAATGCTGTCTCAAGAGCAAACTGTTTAATAGAGAATATCAAGAAAAGGATAAATAAGCCGTGA 1884 0.4347 MKRHVVWIQGFTRALALFPFGNCPFNDPKMLFHNPRHVLFSVRLLLLRPKLVPFFSSSEHSWLSMRGKDRLLIDWPSLPIPERIPNSNPSSNADSNFSLDDFSTIVNLFIDSSISPGPALDTALDRAGIEPDPTLLQAIFDHFDSSPKLLHSLFLWAQKRPGFSASVGLFNSMINVLAKSREFDSAWILLLDRIDKNDEVIFVTKDTFAIMIRRYALAGMPQPAIRTFEYARNLKSSLDPDSEMSLYEILLDSLCKEGSVRAASEYFLQRKRMDPCWVPSIRVYNIMLNGWFRSRNLKHAERFWAAMKKENVRPSVVTYGTLVEGYCRMRHIEKALELVGDMTKEGIEANAIVYNPIIDALAEAGRFKEALGMLERFLVLETGPTNSTYNSLVKGFCKAGDLVGASKILKMMISRGFIPSPTTYNYFFRHFSRYGKVEEGMNLYTKMIESGYSPDRLTYHLLVKMLCEEERLNLAVQVSKEMRSKGYDVDLATSTMLVHLLCKMHRLEEAFAEFENMIRRGIVPQYLTFQRLNNELKKQGMIEMARKLCSMMSSVPHSTNLPNTYVEEIDEAHARRRSIMQKAKAFSDMLKSCKDPRELAKYRCSSENAVSRANCLIENIKKRINKP 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Dere05g2116 627 Gene3D Tetratricopeptide repeat domain 135 272 IPR011990 GO:0005515
Dere05g2116 627 NCBIfam pentatricopeptide repeat 283 315 IPR002885 -
Dere05g2116 627 NCBIfam pentatricopeptide repeat 388 420 IPR002885 -
Dere05g2116 627 NCBIfam pentatricopeptide repeat 495 524 IPR002885 -
Dere05g2116 627 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Dere05g2116 627 NCBIfam pentatricopeptide repeat 352 376 IPR002885 -
Dere05g2116 627 NCBIfam pentatricopeptide repeat 423 455 IPR002885 -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Dere05g2116 627 Gene3D Tetratricopeptide repeat domain 273 381 IPR011990 GO:0005515
Dere05g2116 627 Gene3D Tetratricopeptide repeat domain 382 613 IPR011990 GO:0005515
Dere05g2116 627 Pfam PPR repeat 170 190 IPR002885 -
Dere05g2116 627 Pfam PPR repeat 494 522 IPR002885 -
Dere05g2116 627 Pfam PPR repeat 353 376 IPR002885 -
Dere05g2116 627 Pfam PPR repeat family 279 328 IPR002885 -
Dere05g2116 627 Pfam PPR repeat family 385 431 IPR002885 -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Dere05g2116 627 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 81 468 - -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Dere05g2116 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2116 Dere-ChrDere05 31264616 31266832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2116 421 592 Glycosyltransferase AT1G05670 21.714 9.20e-06 47.0