Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2112 ATGGATGTTCTCTCACCAGAACTATATCTTGAAGGTCCATCCGACACTTACCTATTGTTGATGGAGCAGACAGGGCACTTGAACAGTGGTCAGCACGTCATTGACTTAGCTGGGAGTACCGATGCTTCAACATCTAGCTCTCCTCATGATAGATATTTTAGTGGTGTAGATACATCAGAACATGAAGATGGGCCCAGTAGTGTAGAATTCCCTGTTTCTCAGCAATCAGTTTCTCCCTCTAGTGTATCTAATGGATCAAATTCTAGGAATTCTCCATCAAGGAGACGAGTGGAAACCCGTCGATCCAGGAATCCATTAAATTCTGGGTTTTGGATATCAATTGAGCTATTCCTCACAGTAAGCCAGATTGTTGCATCTATGATTGTTTTGTCTTTGTCAAAGCATGAGCATCCACACACCCCATTGTTTGCATGGATTGTCGGTTATGCCACCGGATGTGCTGCCATCCTCCCTCTGCTTTATTGGCGGTATTACCATGGTAATCAGATCCAAGAGCAAGATTCATCTCAACTGCACGAGACTTCTCTTCAGATTAGTATTTCTTCTGGGACATATCATTCTGTTACCAGAACTGGTGGACAAGAAGATGATCAGGTTGTTGCCGCATCATCCAGAAGCAATCAAGGTTCGTGGTTGACGAATACAAGACTGAAGAAACTATTGGAATACTTCAAAATGGCCCTAGATTTCTTTTTTGCTGTATGGTTTGTTGTTGGCATTGTATGGATCTTTGGGGGACAGTCATCTGCTGATGAGGCTCCTAACTTGCGTAGGTTAACCATAGTGTTTCTCGTCTTTAGTTCTATTGGTTATGCTATGCCCTTCGTTCTATGTGCAACAATATGCTGCTGTCTGCCTTGTATAATTTCCATATTTGGGGTAAGAGAAGATCAGATACAAACCAGAGGGGCAACCACTGAATCCATTAATGCTTTGCCAACTTACAAGTTCAAAATGAAGAAATGTAAACACGATGAAAGCAGCTCTGCTATGGGGGAAGGTGGACTTGTGGCTGCAGGAACGGAAAAGGAGCGCATCATCTCAGGAGAGGATGCGGCTTGCTGCATCTGCCTGACAAAGTATGAAGACAACGATGAGTTGAGAGAATTGGCTTGTTTGCATCTTTTTCACAAAGACTGTGTAGATAAGTGGCTGAAGATAAATGCATTATGCCCTCTCTGCAAGGGCGAGATTGAGAACGCAAGAAGATCATCAGGCTCCGGAGAAGATGCCGGCCAACAAGTTGAGAATATATTGTAA 1281 0.434 MDVLSPELYLEGPSDTYLLLMEQTGHLNSGQHVIDLAGSTDASTSSSPHDRYFSGVDTSEHEDGPSSVEFPVSQQSVSPSSVSNGSNSRNSPSRRRVETRRSRNPLNSGFWISIELFLTVSQIVASMIVLSLSKHEHPHTPLFAWIVGYATGCAAILPLLYWRYYHGNQIQEQDSSQLHETSLQISISSGTYHSVTRTGGQEDDQVVAASSRSNQGSWLTNTRLKKLLEYFKMALDFFFAVWFVVGIVWIFGGQSSADEAPNLRRLTIVFLVFSSIGYAMPFVLCATICCCLPCIISIFGVREDQIQTRGATTESINALPTYKFKMKKCKHDESSSAMGEGGLVAAGTEKERIISGEDAACCICLTKYEDNDELRELACLHLFHKDCVDKWLKINALCPLCKGEIENARRSSGSGEDAGQQVENIL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2112 426 SUPERFAMILY RING/U-box 352 407 - -
Dere05g2112 426 MobiDBLite consensus disorder prediction 68 92 - -
Dere05g2112 426 FunFam E3 ubiquitin-protein ligase 344 411 - -
Dere05g2112 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 412 IPR013083 -
Dere05g2112 426 Pfam Ring finger domain 360 402 IPR001841 -
Dere05g2112 426 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Dere05g2112 426 MobiDBLite consensus disorder prediction 38 101 - -
Dere05g2112 426 MobiDBLite consensus disorder prediction 38 53 - -
Dere05g2112 426 SMART ring_2 361 401 IPR001841 -
Dere05g2112 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2112 Dere-ChrDere05 31223464 31228120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2112 58 405 C3H Transcription Factor Family AT1G80400 54.286 3.46e-132 384