Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2106 ATGTGTTTGGTATCATGGAATGAAATGTCAGGGGAAAAGCTTACTCCATCTGCATTCAACCGGCAATCCAATTCGCCTTCGCTGTTGTATCATTGGCGCTTTGAGAGGGATTGGAAAATGCCTGTCAAATCGGCGCAATCATCATTCCGGGATCGTACACAAGAATTTCAGAGTATTGCGGAGAGGCTAAAGAAGTCAGTTTCATCCGGATCGGGGTCAAATGGGCCAAGTAGTAGTTCAAGATCGGAGGAACAGCGATCTGCGGTGGCAATTCAGTCAGAGTTCAATCGGAGGGCTTCCAAGATAGGATATGGGATACATCAGACATCACAGAAACTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACTTCGGTTTTCGATGACCCGACCATGGAAATCCAAGAGCTCACAGCAGTTATCAAGCAAGATATTACTGCACTGAACTCTGCTGTTGTGGATCTTCAGCTAATCAGCAACTCTAGAAATGAAAGTGGAAATATCTCTAGTGATACAACTAGTCATTCAACCACAGTTGTGGATGACCTTAAAACCCGATTGATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGGACAGAGAACTTGAAGGTGCATGAGAACAGAAGACAATTATTCTCTTCCACTGCATCTAAGGAAGCTGCAAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAGGTCAGCTGCCAATGCTTCTAATGCCCCTGCTCCTCCATGGGCTAGTGGGTCACCATCTTCATCTCAGATGTTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCGTTGCTGCAGCAGCAACAGCAGCAGCAATTGGTTCCATTGCAAGACACTTACATGCAAAGCAGGGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAACATCTTTAATCAATTGGCAACGCTTGTTTCCCAACAAGGGGAAATTGCTATCAGGATTGACGAGAACATGGATGATACTTTGGCAAATGTTGAGGGGGCACAGGGGGCTTTGTTAAAATATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAG 1134 0.4444 MCLVSWNEMSGEKLTPSAFNRQSNSPSLLYHWRFERDWKMPVKSAQSSFRDRTQEFQSIAERLKKSVSSGSGSNGPSSSSRSEEQRSAVAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLISNSRNESGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAARSAANASNAPAPPWASGSPSSSQMFPKKQVDGESQPLLQQQQQQQLVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2106 377 SUPERFAMILY t-snare proteins 93 340 IPR010989 GO:0016020|GO:0016192
Dere05g2106 377 PANTHER SYNTAXIN 88 369 IPR045242 -
Dere05g2106 377 ProSitePatterns Syntaxin / epimorphin family signature. 291 330 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere05g2106 377 Gene3D - 90 340 - -
Dere05g2106 377 Pfam SNARE domain 321 373 IPR000727 -
Dere05g2106 377 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 46 65 IPR021538 -
Dere05g2106 377 MobiDBLite consensus disorder prediction 62 88 - -
Dere05g2106 377 MobiDBLite consensus disorder prediction 233 275 - -
Dere05g2106 377 MobiDBLite consensus disorder prediction 243 275 - -
Dere05g2106 377 CDD SNARE_syntaxin5 288 366 - -
Dere05g2106 377 SMART tSNARE_6 280 347 IPR000727 -
Dere05g2106 377 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 285 347 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2106 Dere-ChrDere05 31117631 31123108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2106 40 377 SNARE and Associated Proteins AT3G24350 65.289 1.36e-147 420