Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2104 ATGCTTTCTTTCCACATCGATGCAAATTGTGGTTTAGTTGTTGACCCTAAGAAGATGGGAAATCGGATAAAAGAAGAAGAGAAAATTGAAAGAGTAATTCGAAGTCTCTCGAAACTTCCTGAAAATCGGAGATGTATCAACTGCAATAGTTTGGGCCCACAATATGTCTGCACAACTTTTTGGACATTCGTCTGTACAAACTGCAGTGGAATACAACGAGAGTTCAACCATAGAGTAAAATCAGTGTCAATGGCTAAATTTACTGCAGAAGAAGTCACAGCTCTACAAGCAGGCGGCAATGAAAGAGCAAAGCAGATTTATTTTAAAGATTGGGATCCTCGTCGTCATTCTTATCCTGATTCCAATAACGTACAGAGACTTCGCGATTTCATCAAGCACGTTTATGTGGATAGAAAATTCACCGGTGAAAGAGCCCAAAATAATCTTTCCAGAGTTAGATTGAATGACAAGGATGAGTCCCACGAAAGCAGGAAGATCTGTTTTTTACAAAGCCCACGTTATGAAGATAGAAATGATCCCCGTAGTCCTAGTTTACGAAACGAGGACAGTAGTGTCAAGTTTTACTATGATGAAAGAAGAAGTCCTAGATATGCCTCAAGGAATGGCAACCAAAGAAGAAATCCTATAAAAATTGAGGTTGTTGATGACAGGTTCCGAGACAATGAATCTAGAAGTCGCAGGTTTTCAAGTACAGAATCAAAGGTAACAGCGGTTCCCCCCGATGGTCAAATGAATGCAGACAGTGGGAAGAAGCTTGCATCTGCCAGTGGGCAGAAATCCGTTAAGGAGAATCCAGCCGAACAAAGATATAATAATCCAGAAACACAGATAATTATCGTCTCATCCCAGCTATCTGATGCTGCCGATGCACCGGATGCACAGCCTACATCACAATCAAATGGAAGTGACTGGGCCCCTTTTGAAAATTCTACAGCAGAGGAGGCTCCTCAAACTCCAAACAGAAATAACTTAAAAGCTTCTACTACAGAGACGATACCTAAAACTACAGATACTCTAGAATTTTTACTTTCTGAATTGTCTGGTCCCTTGTATGCAACAGCTAGTGGCATATATGAAGTCCACAGTGCTGATATTGATCCTTCATCTGCAACTGTAGAAAATCTGTCTGCTGGTGGGGATTTACCACCTACTTCAACAGGCCAGATAACTGCATATCCCAACAATGTTGGTGCTTCCTCAGTTACATCAACCACCAACACTGAGCTGACACAACCCTCTGCAGCTTGTGGCTCTACAACACAATCAATGAGTCCACCTGCCAGAGCTGTACCTTTGAATAATCAGCCAACAGTTGCTCCTAATGCGCAAAACCTTTCAAGCACTTTTGCTGAACTATGTCTTCAAGACACATCAAAACCTGCTCAAGACACCAGATCTGAAGTTAAAACCCAACCTAGTACAATAGAAACCAAGTCTATTGGAAGAAAGGAACTTCCAGCAGACCTCTTTACTACAAGCTACTTATCTGGCCCTGCACCACAAGCAAGTTGGCAGAATGTTCAACCTCATAATATGGGATACGGCTTGCAGTATTATGCTAATGCAGCACCAGTCTCGGCATTTCCCCCTGCAGCAAACTACACAAACCCATTTGATGTAACTGAGGGGAAAACTCAAGTCCATGCTTCACAGTTTCCTACTATGGCAACTCTACAAGGTGCACAACCTGCTATGTCAACTGGAGCAGGATTAGTGCGTACTTTGAGCATCGGGGCTCTAGGGTCGATGGTGCCTCAATCCCCAAATTATGCATCTCTAATGCCTCCACAACCTCCCTTTTCTCCTGGATTTGCTGCTGGTGCATACTTTGAACAAATTAATAATAATATGCAACCTCCCAGACCTCGAAGAGCTGGCAGCTTCAATAGTGACAGAACCATTCAGCAGTCAGCAGGGGGATATATGGCTACCAGCGGCACTCCAAATTCTTTTCCGAAGAGAGGAGGAAATCCATTTGGATAA 2004 0.4291 MLSFHIDANCGLVVDPKKMGNRIKEEEKIERVIRSLSKLPENRRCINCNSLGPQYVCTTFWTFVCTNCSGIQREFNHRVKSVSMAKFTAEEVTALQAGGNERAKQIYFKDWDPRRHSYPDSNNVQRLRDFIKHVYVDRKFTGERAQNNLSRVRLNDKDESHESRKICFLQSPRYEDRNDPRSPSLRNEDSSVKFYYDERRSPRYASRNGNQRRNPIKIEVVDDRFRDNESRSRRFSSTESKVTAVPPDGQMNADSGKKLASASGQKSVKENPAEQRYNNPETQIIIVSSQLSDAADAPDAQPTSQSNGSDWAPFENSTAEEAPQTPNRNNLKASTTETIPKTTDTLEFLLSELSGPLYATASGIYEVHSADIDPSSATVENLSAGGDLPPTSTGQITAYPNNVGASSVTSTTNTELTQPSAACGSTTQSMSPPARAVPLNNQPTVAPNAQNLSSTFAELCLQDTSKPAQDTRSEVKTQPSTIETKSIGRKELPADLFTTSYLSGPAPQASWQNVQPHNMGYGLQYYANAAPVSAFPPAANYTNPFDVTEGKTQVHASQFPTMATLQGAQPAMSTGAGLVRTLSIGALGSMVPQSPNYASLMPPQPPFSPGFAAGAYFEQINNNMQPPRPRRAGSFNSDRTIQQSAGGYMATSGTPNSFPKRGGNPFG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2104 667 MobiDBLite consensus disorder prediction 622 659 - -
Dere05g2104 667 PANTHER ARFGAP/RECO-RELATED 19 667 IPR044820 GO:0005096
Dere05g2104 667 Gene3D Arf GTPase activating protein 19 153 IPR038508 -
Dere05g2104 667 FunFam Arf-GAP domain and FG repeat-containing protein 1 19 152 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 465 485 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 165 205 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 216 236 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 165 279 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 622 667 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 465 489 - -
Dere05g2104 667 CDD ArfGap_AGFG 30 140 - -
Dere05g2104 667 MobiDBLite consensus disorder prediction 256 279 - -
Dere05g2104 667 Pfam Putative GTPase activating protein for Arf 31 142 IPR001164 GO:0005096
Dere05g2104 667 ProSiteProfiles ARF GTPase-activating proteins domain profile. 30 148 IPR001164 GO:0005096
Dere05g2104 667 PRINTS HIV Rev interacting protein signature 79 100 IPR001164 GO:0005096
Dere05g2104 667 PRINTS HIV Rev interacting protein signature 42 61 IPR001164 GO:0005096
Dere05g2104 667 PRINTS HIV Rev interacting protein signature 61 78 IPR001164 GO:0005096
Dere05g2104 667 SMART arf_gap_3 30 148 IPR001164 GO:0005096
Dere05g2104 667 MobiDBLite consensus disorder prediction 291 336 - -
Dere05g2104 667 SUPERFAMILY ArfGap/RecO-like zinc finger 30 141 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2104 Dere-ChrDere05 31096690 31101211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2104 30 140 C2H2 Transcription Factor Family AT4G05330 33.333 3.43e-11 63.5