Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2078 ATGAGTAGACCAGCTACGCGAAGTAAAAATAAAAGACAAAGACAAGTGGATGATGGTGCCAGCACTTCTGAAATATGGAGGAAAATTCATGAGACAGGTGTGGTGACTGATGATGATATGAATCAACTGTATATGATTTGGAAGCCAATCTGTTCAGGCTGCCGTGTCAATACCAAAGACAACCCTAATTGCTTTTGCGCATTGGTTCCACCTCCCAATGGAACCCGGAAGTCAGGCTTATGGCAGAAGATGTCAAGCATTGTTGACAATCTTGGCCCTGACCCAACCAAGGATCTACGTGCTTCTGCTAATACACCTGCTGGTCTGACAAATCTTGGGGCTACATGCTATGCGAATAGTATACTTCAGTGCTTGTACATGAATAAATCTTTCCGGGAAGGAATATTTTCTGTAGAACCAGATGTTTTGCAACAACAGCCAGTGTTAAATCAACTGGTTCGGCTTTTTGTGCAGTTGCACATTAGTAAAAGGGCTTTTGTAGATTCCTTTCCATTTGTAAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTGACATTGCTTCTGTCATTGCTTGAGCGTTGCCTGAGCCATTCTAAAGTTCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACGACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGCTGGAGTTAAATGTCAAGGGATTTAGAAGTTTAGATGAGAGCTTAAATGATTACCTCACTGTTGAAGAGCTTCATGGAGATAATCAATATTTTTGCGAGTCATGTAAAACAAGAGTTGATGCTACTCGTAGCATCAAGCTGCGCACATTACCTGATGTACTTAATATTCAACTTAAGCGATGTGTCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGCAATTTCATTTCCTGCTAAGCTTGACATGCGGCATAGACTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTCCTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTGGCTCACATCAAGGATGAGAATACTGGGCAATGGTGGGAATTCGATGATGAGCATGTCACCAAATTAGGTTATCACCCATTTGGTGACAGATCTTCAAATTCTACTGCAAAATCTGTTAGGACTGATTCTACTCATTCTGATAGCTCTGAAGCAAGGATAGCTGACAGTAATGGAAATGGTTTGGATGCCACTCACTCACATTCTTCTCTCATGGATACATTTTCATCTAGTGATGCATACATGTTGATGTACAACCTTAAGTATTCCATAAATGTTGTCAAAATGGGTGATGTGGTCAGTGGTGGTGACGTAGTTGCTGCACAAGACAGTTTTCCTCTTTTATCTCATCTTTTTGATGAGATTCAAAATTTTAATGCCTCGTATCTTGATGAGTGTGAGCAGTACAAGCATAGGAAGGAGTTAGAATTGAGTCATATCACTGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTATTGGATTTCTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTAGTGCAACCGTTCTTGACAACACATCCATTCAATGCTCACATGGGAAAGTTCCAGTATCTAAGGTTGCTTCCATGAAGCGATTGTCTGATAAAGCATGGGATAAGTTGTTATCTAAGTATGGTGGGGGGCCAACACTGTCCCATGGTGACTGCTGTTGGGATTGTCTAATCGATGGGGCTCACTCTGTGGTGTCAGCTGACACCTATCGCGACCGAAGAGAATCAATGAAGCAACTTGCACGGGACATTCTTGATGGAAACTGTCCAGATGGAGAGTATTACATATCTAGACCTTGGTTGCAACAGTGGTGGAAAAGAAAAGTACTAGATGCTCCCTCTGAAGCTGATGCTGGACCAACAGCATCAATTAGTTGCCCACATGGGCAACTTATTCCTGAGCAAGCTGCTGGTGCTAAGCGGGTGCTTGTTCCTGAGAGCTTTTGGAACTTCTTATATGAAGATGCTGTTTCTGTAAAACCTGATGATCCTATGGGTTGCCCTACTTTTCATTCAGACTCCAGAGAGTGTTCCCAATGCAGTGATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTCTAAGGTTAGTGAAACAAAGGCAACGTCAGAATCATGAGAAACTATTAGTGGCTAAAAGTTTGCCACTCTCGCTGCGTTGCAAGTATTTCTTAGTGCCTTCTTCATGGATTTCAAAATGGAGAACTTACATGAGTCCATCTGTCAAGAATTCAGACAAACCTGAAACTTTAGATGGGATAATTAATTCCTTGATTTGTGAAAAGCACTCACGGCTCGTAGAAAGGCCCCCTGAGCTGGTTTTCAGACGGGGTGCAATAATCCAGAGAGAGTCTTCTGCAGGTGGTTTAACTATCATATCTGAGAATGACTGGAAATGCTTTTGTGAAGAATGGGGTGGTACTGAGGCAAAAGGCATATCTGCAACAATTGAGAATGTCAGTGATTCAGAGAATATATTGACTGGATCCTGCATGGAGACACCAATATGTGAGGATCAGTTGAGTGATAAAGTAAATAATGATAGCGGGAATAGTCAAATTGTGATTAAGACCTGTCCAGAGATTTGTGAAAGTTGCATTGGAGAAAGAAAAAGCTGTGAGTTAATGCAGAAACTTAATTATTGCAACGAGAACATAAGTGTGATTCTTGTACGGGGAAAAGAAGTTCCTAGATCAATATTAGAGGCCTCTAAGGGCTCTGTTGAAACAGATCGGCGTGTTTCCAAGCGCTCTCGGAAGTCTAAAAATGGGACTTCAATTAGTCTTAATGTTTCTGCTTCAACATCATTGTACCAGCTAAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACAGAAAGGTGACAGGACAATTGATATTGACGATGAATGTGCTACCCTTGCAGATGTAAATATATTTGCAGGAGATCAGATTATTGTCAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGATTTGTGACGAGAAAATGGAAATGCAGCATACTGAGGGAGGGTTTCGTGGAACACTTTTGACGGCAGACGTTTCATCTCAGGTTGTTTGA 3225 0.4167 MSRPATRSKNKRQRQVDDGASTSEIWRKIHETGVVTDDDMNQLYMIWKPICSGCRVNTKDNPNCFCALVPPPNGTRKSGLWQKMSSIVDNLGPDPTKDLRASANTPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDVLQQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFRSLDESLNDYLTVEELHGDNQYFCESCKTRVDATRSIKLRTLPDVLNIQLKRCVFLPETTTRKKITSAISFPAKLDMRHRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENTGQWWEFDDEHVTKLGYHPFGDRSSNSTAKSVRTDSTHSDSSEARIADSNGNGLDATHSHSSLMDTFSSSDAYMLMYNLKYSINVVKMGDVVSGGDVVAAQDSFPLLSHLFDEIQNFNASYLDECEQYKHRKELELSHITERRQEVRSVLAEAPVQPLEQPFYWISSDWLRQWADNISATVLDNTSIQCSHGKVPVSKVASMKRLSDKAWDKLLSKYGGGPTLSHGDCCWDCLIDGAHSVVSADTYRDRRESMKQLARDILDGNCPDGEYYISRPWLQQWWKRKVLDAPSEADAGPTASISCPHGQLIPEQAAGAKRVLVPESFWNFLYEDAVSVKPDDPMGCPTFHSDSRECSQCSDELSEVACLEDSLRLVKQRQRQNHEKLLVAKSLPLSLRCKYFLVPSSWISKWRTYMSPSVKNSDKPETLDGIINSLICEKHSRLVERPPELVFRRGAIIQRESSAGGLTIISENDWKCFCEEWGGTEAKGISATIENVSDSENILTGSCMETPICEDQLSDKVNNDSGNSQIVIKTCPEICESCIGERKSCELMQKLNYCNENISVILVRGKEVPRSILEASKGSVETDRRVSKRSRKSKNGTSISLNVSASTSLYQLKMMIWESFGVVKENQILQKGDRTIDIDDECATLADVNIFAGDQIIVRDSEIHENRDIADEICDEKMEMQHTEGGFRGTLLTADVSSQVV 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2078 1074 ProSiteProfiles DUSP domain profile. 742 862 IPR006615 GO:0004843
Dere05g2078 1074 FunFam Ubiquitin carboxyl-terminal hydrolase 26 498 596 - -
Dere05g2078 1074 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Dere05g2078 1074 SMART dusp 525 596 IPR006615 GO:0004843
Dere05g2078 1074 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Dere05g2078 1074 Gene3D Cysteine proteinases 93 450 - -
Dere05g2078 1074 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 73 448 - -
Dere05g2078 1074 ProSiteProfiles DUSP domain profile. 507 599 IPR006615 GO:0004843
Dere05g2078 1074 MobiDBLite consensus disorder prediction 394 429 - -
Dere05g2078 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Dere05g2078 1074 SUPERFAMILY DUSP-like 510 595 IPR035927 -
Dere05g2078 1074 MobiDBLite consensus disorder prediction 1 21 - -
Dere05g2078 1074 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Dere05g2078 1074 MobiDBLite consensus disorder prediction 413 429 - -
Dere05g2078 1074 ProSiteProfiles DUSP domain profile. 614 721 IPR006615 GO:0004843
Dere05g2078 1074 SUPERFAMILY Ubiquitin-like 967 1033 IPR029071 -
Dere05g2078 1074 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Dere05g2078 1074 SUPERFAMILY DUSP-like 635 700 IPR035927 -
Dere05g2078 1074 Gene3D - 498 596 IPR035927 -
Dere05g2078 1074 Gene3D - 738 858 IPR035927 -
Dere05g2078 1074 SUPERFAMILY Cysteine proteinases 104 450 IPR038765 -
Dere05g2078 1074 CDD Ubl_USP48 964 1065 IPR044743 GO:0004197|GO:0004843|GO:0016579
Dere05g2078 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Dere05g2078 1074 Gene3D - 963 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2078 Dere-ChrDere05 30890123 30898023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2078 105 411 Miscellaneous Gene Families AT4G31670 29.240 6.43e-28 119